The 2.0 version of rSNPBase

Variant report

Variant rs662660
Chromosome Location chr1:45406057-45406058
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45347600-45410800 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
2 chr1:45350800-45411800 Weak transcription Left Ventricle heart
3 chr1:45355800-45411200 Weak transcription Fetal Lung lung
4 chr1:45356000-45407000 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr1:45356000-45423800 Weak transcription Thymus Thymus
6 chr1:45357400-45411800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
7 chr1:45359000-45411800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
8 chr1:45359200-45423600 Weak transcription Primary T cells fromperipheralblood blood
9 chr1:45360600-45410000 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr1:45362200-45424200 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:45373000-45411600 Weak transcription HepG2 liver
12 chr1:45375200-45411800 Weak transcription Aorta Aorta
13 chr1:45378200-45412000 Weak transcription Brain Hippocampus Middle brain
14 chr1:45378600-45412200 Weak transcription Fetal Adrenal Gland Adrenal Gland
15 chr1:45384600-45412600 Weak transcription Psoas Muscle Psoas
16 chr1:45384800-45406800 Weak transcription iPS-20b Cell Line embryonic stem cell
17 chr1:45386200-45406600 Weak transcription Rectal Mucosa Donor 29 rectum
18 chr1:45386400-45411600 Weak transcription Fetal Kidney kidney
19 chr1:45387800-45413000 Weak transcription Primary T helper 17 cells PMA-I stimulated --
20 chr1:45387800-45413200 Weak transcription Spleen Spleen
21 chr1:45388200-45408400 Weak transcription HUES64 Cell Line embryonic stem cell
22 chr1:45388400-45412800 Weak transcription Brain Germinal Matrix brain
23 chr1:45389000-45412600 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
24 chr1:45389200-45407400 Weak transcription Brain Substantia Nigra brain
25 chr1:45389200-45412800 Weak transcription Brain Anterior Caudate brain
26 chr1:45389200-45450200 Weak transcription Primary T killer memory cells from peripheral blood blood
27 chr1:45389800-45412400 Weak transcription Brain Inferior Temporal Lobe brain
28 chr1:45390400-45426200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
29 chr1:45390600-45411800 Weak transcription Brain Cingulate Gyrus brain
30 chr1:45391000-45406400 Weak transcription Esophagus oesophagus
31 chr1:45391000-45411800 Weak transcription HSMMtube muscle
32 chr1:45391200-45406200 Weak transcription Duodenum Mucosa Duodenum
33 chr1:45391200-45411600 Weak transcription Colon Smooth Muscle Colon
34 chr1:45391200-45412800 Weak transcription Primary T helper cells PMA-I stimulated --
35 chr1:45391200-45438400 Weak transcription Dnd41 blood
36 chr1:45391200-45439800 Weak transcription Primary T regulatory cells fromperipheralblood blood
37 chr1:45391400-45437200 Weak transcription Fetal Thymus thymus
38 chr1:45391600-45409400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
39 chr1:45392400-45411800 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:45392400-45433800 Weak transcription Primary hematopoietic stem cells blood
41 chr1:45392600-45411800 Weak transcription HSMM muscle
42 chr1:45392600-45412200 Weak transcription Liver Liver
43 chr1:45392600-45412600 Weak transcription Duodenum Smooth Muscle Duodenum
44 chr1:45392600-45423600 Weak transcription Fetal Intestine Large intestine
45 chr1:45392800-45443200 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
46 chr1:45393200-45411600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
47 chr1:45393200-45411800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
48 chr1:45396000-45411600 Weak transcription Muscle Satellite Cultured Cells --
49 chr1:45396000-45411800 Weak transcription Gastric stomach
50 chr1:45396200-45406600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived

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Last update: Aug 31, 2015