Variant report

Variant rs2641988
Chromosome Location chr9:552783-552784
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:54 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr9:546600-557000 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
2 chr9:546600-569400 Weak transcription Esophagus oesophagus
3 chr9:547200-557800 Weak transcription Placenta Placenta
4 chr9:547400-557600 Weak transcription H1 Cell Line embryonic stem cell
5 chr9:547600-555000 Weak transcription Sigmoid Colon Sigmoid Colon
6 chr9:547600-557600 Weak transcription HUES64 Cell Line embryonic stem cell
7 chr9:547600-571200 Weak transcription Aorta Aorta
8 chr9:547800-556400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
9 chr9:547800-556800 Weak transcription Duodenum Smooth Muscle Duodenum
10 chr9:547800-563000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
11 chr9:548200-560400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
12 chr9:549600-557600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr9:549600-557800 Weak transcription ES-I3 Cell Line embryonic stem cell
14 chr9:549800-557800 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
15 chr9:549800-558000 Weak transcription Brain Angular Gyrus brain
16 chr9:549800-569000 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr9:549800-593800 Weak transcription Lung lung
18 chr9:550000-555000 Weak transcription Colonic Mucosa Colon
19 chr9:550000-555800 Weak transcription Stomach Smooth Muscle stomach
20 chr9:550200-555000 Weak transcription HMEC breast
21 chr9:550200-556400 Weak transcription Fetal Intestine Large intestine
22 chr9:550200-562400 Weak transcription Fetal Intestine Small intestine
23 chr9:550400-556400 Weak transcription Stomach Mucosa stomach
24 chr9:550600-552800 Enhancers Fetal Heart heart
25 chr9:550600-552800 Weak transcription Fetal Muscle Trunk muscle
26 chr9:550600-555200 Weak transcription Gastric stomach
27 chr9:550800-562600 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr9:551600-552800 Enhancers NHEK skin
29 chr9:551600-553600 Enhancers Brain Hippocampus Middle brain
30 chr9:551600-554800 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
31 chr9:551600-557400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr9:551800-554800 Weak transcription A549 lung
33 chr9:552000-552800 Enhancers Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr9:552000-553000 Enhancers Brain Substantia Nigra brain
35 chr9:552000-553000 Enhancers Right Atrium heart
36 chr9:552000-553200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
37 chr9:552000-553200 Enhancers Fetal Lung lung
38 chr9:552000-553200 Enhancers Ovary ovary
39 chr9:552000-553600 Enhancers Left Ventricle heart
40 chr9:552200-552800 Enhancers Cortex derived primary cultured neurospheres brain
41 chr9:552200-552800 Enhancers Brain Anterior Caudate brain
42 chr9:552200-553000 Bivalent Enhancer Fetal Brain Male brain
43 chr9:552200-553200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
44 chr9:552200-557000 Enhancers Breast Myoepithelial Primary Cells Breast
45 chr9:552200-557600 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
46 chr9:552200-557800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr9:552400-552800 Weak transcription Fetal Adrenal Gland Adrenal Gland
48 chr9:552400-554800 Weak transcription Pancreas Pancrea
49 chr9:552400-560400 Weak transcription Brain Cingulate Gyrus brain
50 chr9:552400-560800 Weak transcription Brain Inferior Temporal Lobe brain

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