Variant report

Variant	rs2643927
Chromosome Location	chr12:26193294-26193295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10459081	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap]
rs10771250	0.90[CHB][hapmap]
rs10771255	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs10842651	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs10842655	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10842658	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842659	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11048363	0.90[CHB][hapmap]
rs12369462	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1513124	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.83[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1874351	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs1986802	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1994995	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2251618	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2271483	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2643930	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2643933	0.85[YRI][hapmap]
rs2729631	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2729634	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2729635	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61247260	0.81[ASN][1000 genomes]
rs6487522	0.90[CHB][hapmap]
rs7132820	0.82[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[YRI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7136804	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7137379	0.95[CHB][hapmap];0.94[JPT][hapmap];0.99[ASN][1000 genomes]
rs7138742	0.95[CHB][hapmap];0.88[JPT][hapmap]
rs7139241	0.95[CHB][hapmap];0.94[JPT][hapmap];0.93[ASN][1000 genomes]
rs7295585	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7299421	0.95[CHB][hapmap];0.94[JPT][hapmap];0.94[ASN][1000 genomes]
rs7956992	0.95[CHB][hapmap];0.94[JPT][hapmap];0.86[YRI][hapmap]
rs7963754	0.94[CHB][hapmap];0.94[JPT][hapmap]
rs7969486	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs7979763	0.90[CHB][hapmap]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26180800-26195000	Weak transcription	HSMM	muscle
2	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
5	chr12:26186200-26193400	Weak transcription	Fetal Lung	lung
6	chr12:26186200-26195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr12:26187800-26194800	Weak transcription	HUVEC	blood vessel
11	chr12:26188000-26194600	Weak transcription	Osteobl	bone
12	chr12:26188000-26195200	Weak transcription	Fetal Kidney	kidney
13	chr12:26188200-26194600	Weak transcription	NHDF-Ad	bronchial
14	chr12:26188200-26194800	Weak transcription	NH-A	brain
15	chr12:26188800-26194000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr12:26189000-26193800	Enhancers	Fetal Intestine Small	intestine
17	chr12:26189200-26194800	Weak transcription	Hela-S3	cervix
18	chr12:26190800-26193600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr12:26191000-26193600	Enhancers	Brain Anterior Caudate	brain
20	chr12:26191000-26195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr12:26191000-26195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr12:26191000-26196000	Weak transcription	Ovary	ovary
23	chr12:26191200-26195000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr12:26191200-26195000	Weak transcription	Stomach Smooth Muscle	stomach
25	chr12:26191200-26195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr12:26191400-26194600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
28	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr12:26192200-26195000	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:26192400-26193600	Enhancers	Brain Angular Gyrus	brain
31	chr12:26192400-26193600	Enhancers	Brain Cingulate Gyrus	brain
32	chr12:26192400-26193600	Enhancers	Brain Substantia Nigra	brain
33	chr12:26192400-26194600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr12:26192400-26195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr12:26192400-26195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr12:26192400-26195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr12:26192400-26195200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
38	chr12:26192400-26195200	Weak transcription	Colon Smooth Muscle	Colon
39	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
41	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr12:26192600-26193400	Enhancers	Brain Hippocampus Middle	brain
46	chr12:26192600-26195000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr12:26192800-26193400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr12:26193000-26193400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr12:26193000-26193600	Enhancers	Right Atrium	heart
50	chr12:26193200-26193400	Enhancers	HUES48 Cell Line	embryonic stem cell

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