Variant report

Variant	rs10771255
Chromosome Location	chr12:26165273-26165274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:120186887..120187680-chr12:26164735..26165561,2	MCF-7	breast:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10431215	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10459081	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10771249	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10771250	0.88[CEU][hapmap];0.80[CHB][hapmap]
rs10842641	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10842642	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10842645	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10842647	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10842648	0.89[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10842651	0.92[CEU][hapmap];0.89[CHB][hapmap];0.88[JPT][hapmap];0.81[YRI][hapmap];0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10842655	0.90[ASN][1000 genomes]
rs10842658	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs10842659	0.81[ASN][1000 genomes]
rs11048363	0.92[CEU][hapmap];0.81[CHB][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11048364	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11048367	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11048370	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11048374	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12227480	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12369462	0.93[ASN][1000 genomes]
rs1513124	0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs1874351	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1994995	0.96[CEU][hapmap];0.89[CHB][hapmap];0.93[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2251618	0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2643927	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.81[ASN][1000 genomes]
rs2643930	0.82[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs2643933	0.96[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2729631	0.85[CHB][hapmap];0.94[JPT][hapmap];0.96[YRI][hapmap];0.81[ASN][1000 genomes]
rs2729634	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs2729635	0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs61247260	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6487522	0.92[CEU][hapmap];0.81[CHB][hapmap];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7132820	0.85[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap]
rs7136804	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7137379	0.85[CHB][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes]
rs7138742	0.85[CHB][hapmap];0.88[JPT][hapmap]
rs7139241	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7295585	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7299421	0.85[CHB][hapmap];0.94[JPT][hapmap]
rs7315752	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7956992	0.94[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7963754	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7964657	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7969486	1.00[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7971906	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7979763	0.93[CEU][hapmap];0.81[CHB][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898931	chr12:26123345-26192936	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26160600-26167000	Weak transcription	Gastric	stomach
2	chr12:26160600-26168000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:26160600-26168200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr12:26160600-26168200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:26160600-26168200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr12:26160600-26170400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr12:26160600-26170600	Weak transcription	Fetal Intestine Small	intestine
8	chr12:26160600-26171600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr12:26161600-26167400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr12:26163400-26168200	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr12:26163600-26166800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr12:26163600-26167000	Weak transcription	Esophagus	oesophagus
13	chr12:26163600-26170400	Weak transcription	Pancreas	Pancrea
14	chr12:26163800-26168200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr12:26163800-26168200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr12:26164000-26168000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr12:26164200-26167000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr12:26164200-26167000	Weak transcription	Fetal Heart	heart
19	chr12:26164200-26168200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr12:26164200-26168200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr12:26164200-26168200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr12:26164200-26170400	Weak transcription	Brain Angular Gyrus	brain
23	chr12:26164400-26168200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr12:26164400-26170400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr12:26164600-26165400	Enhancers	Osteobl	bone
26	chr12:26164600-26165800	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr12:26164600-26166800	Weak transcription	Brain Substantia Nigra	brain
28	chr12:26164600-26167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr12:26164600-26170200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr12:26164600-26170400	Weak transcription	Brain Anterior Caudate	brain
31	chr12:26164600-26171600	Weak transcription	NH-A	brain
32	chr12:26164800-26165800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr12:26164800-26165800	Weak transcription	Right Atrium	heart
34	chr12:26164800-26166000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr12:26164800-26166000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr12:26164800-26166000	Weak transcription	Brain Cingulate Gyrus	brain
37	chr12:26164800-26166000	Weak transcription	Brain Hippocampus Middle	brain
38	chr12:26164800-26166200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr12:26164800-26166800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr12:26164800-26167000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr12:26164800-26167000	Weak transcription	Rectal Smooth Muscle	rectum
42	chr12:26164800-26167000	Weak transcription	Right Ventricle	heart
43	chr12:26164800-26168400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr12:26164800-26168600	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr12:26164800-26168800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr12:26164800-26169000	Weak transcription	Fetal Lung	lung
47	chr12:26164800-26169200	Weak transcription	NHLF	lung
48	chr12:26164800-26170400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr12:26164800-26170400	Weak transcription	Adipose Nuclei	Adipose
50	chr12:26164800-26170400	Weak transcription	Aorta	Aorta

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