Variant report

Variant	rs2645669
Chromosome Location	chr4:77898645-77898646
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:77869504..77871430-chr4:77898039..77900953,2	MCF-7	breast:
2	chr4:77870818..77873520-chr4:77898518..77900245,2	K562	blood:
3	chr4:77897592..77900729-chr4:77901374..77904309,4	MCF-7	breast:
4	chr4:77869723..77872318-chr4:77898011..77900018,2	K562	blood:
5	chr4:77898148..77900686-chr4:77990889..77992486,2	K562	blood:
6	chr4:77898323..77901211-chr4:77930018..77931872,2	K562	blood:
7	chr4:77897958..77899984-chr4:77905348..77908244,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1532449	0.83[EUR][1000 genomes]
rs2645671	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645697	0.83[AMR][1000 genomes]
rs2645698	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2645699	0.83[AMR][1000 genomes]
rs2645702	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703103	0.83[EUR][1000 genomes]
rs4859469	0.83[AMR][1000 genomes]
rs6822843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607858	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72607860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73826488	0.83[EUR][1000 genomes]
rs7696359	1.00[EUR][1000 genomes]
rs904045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1810313	chr4:77778670-77902099	Weak transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77872600-77899200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
2	chr4:77872600-77900400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:77873000-77899200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:77878800-77899200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr4:77879600-77904200	Weak transcription	Gastric	stomach
7	chr4:77881600-77899200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
9	chr4:77884800-77899200	Weak transcription	Placenta	Placenta
10	chr4:77884800-77899200	Weak transcription	Small Intestine	intestine
11	chr4:77884800-77904200	Weak transcription	Pancreas	Pancrea
12	chr4:77886200-77899200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr4:77887600-77899200	Weak transcription	Brain Anterior Caudate	brain
14	chr4:77888000-77899400	Weak transcription	Lung	lung
15	chr4:77890200-77901400	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:77891200-77905600	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr4:77891400-77899200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr4:77891400-77899400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr4:77891400-77899400	Weak transcription	Left Ventricle	heart
20	chr4:77891600-77899400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr4:77891600-77907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr4:77891800-77901800	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:77891800-77905200	Weak transcription	Brain Substantia Nigra	brain
24	chr4:77892000-77898800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr4:77892000-77899600	Weak transcription	Fetal Brain Female	brain
26	chr4:77892000-77902000	Weak transcription	HUES48 Cell Line	embryonic stem cell
27	chr4:77893000-77899200	Weak transcription	Colonic Mucosa	Colon
28	chr4:77893000-77906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr4:77893200-77918800	Weak transcription	A549	lung
30	chr4:77893400-77899400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr4:77893400-77899400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr4:77893400-77901600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:77893400-77901800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr4:77893600-77899200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr4:77893600-77901800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
36	chr4:77893600-77902400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr4:77893800-77901600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr4:77893800-77901600	Weak transcription	Fetal Brain Male	brain
39	chr4:77894000-77899200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr4:77894000-77901600	Weak transcription	HUES6 Cell Line	embryonic stem cell
41	chr4:77894200-77901400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr4:77894200-77901600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
43	chr4:77894400-77898800	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr4:77894400-77898800	Genic enhancers	HSMM	muscle
45	chr4:77894600-77899400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr4:77894600-77903000	Weak transcription	Esophagus	oesophagus
47	chr4:77894800-77899200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr4:77894800-77899200	Weak transcription	Fetal Lung	lung
49	chr4:77894800-77904200	Weak transcription	Fetal Intestine Small	intestine
50	chr4:77895200-77905600	Weak transcription	Stomach Smooth Muscle	stomach

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