Variant report

Variant	rs6822843
Chromosome Location	chr4:77903122-77903123
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr4:77903034-77903155	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:77897592..77900729-chr4:77901374..77904309,4	MCF-7	breast:
2	chr4:77902465..77905363-chr4:77905756..77910495,7	K562	blood:
3	chr4:77868707..77872167-chr4:77902986..77905769,6	K562	blood:
4	chr4:77889376..77894977-chr4:77900561..77905998,5	MCF-7	breast:
5	chr4:77870667..77872257-chr4:77902863..77905769,2	K562	blood:
6	chr4:77894869..77896683-chr4:77901568..77903976,2	MCF-7	breast:

No data

Variant related genes	Relation type
SEPT11	TF binding region
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1532449	1.00[CEU][hapmap];0.81[CHB][hapmap];0.83[EUR][1000 genomes]
rs2645668	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs2645669	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645671	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645697	1.00[CEU][hapmap];0.83[AMR][1000 genomes]
rs2645698	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2645699	0.83[AMR][1000 genomes]
rs2645702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703103	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes]
rs2703111	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs4252903	1.00[CEU][hapmap];1.00[GIH][hapmap]
rs4859469	0.83[AMR][1000 genomes]
rs72607857	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607858	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72607860	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73826488	0.83[EUR][1000 genomes]
rs7696359	1.00[EUR][1000 genomes]
rs904045	1.00[EUR][1000 genomes]

No data

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77876800-77906000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:77879600-77904200	Weak transcription	Gastric	stomach
3	chr4:77882200-77905200	Weak transcription	Fetal Intestine Large	intestine
4	chr4:77884800-77904200	Weak transcription	Pancreas	Pancrea
5	chr4:77891200-77905600	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr4:77891600-77907000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr4:77891800-77905200	Weak transcription	Brain Substantia Nigra	brain
8	chr4:77893000-77906600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr4:77893200-77918800	Weak transcription	A549	lung
10	chr4:77894800-77904200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:77895200-77905600	Weak transcription	Stomach Smooth Muscle	stomach
12	chr4:77896200-77905000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr4:77896400-77903400	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:77897800-77905400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr4:77898400-77903600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:77899000-77908400	Enhancers	Adipose Nuclei	Adipose
17	chr4:77899200-77907600	Enhancers	Placenta	Placenta
18	chr4:77899600-77903600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:77899600-77904200	Weak transcription	Brain Anterior Caudate	brain
20	chr4:77899600-77904200	Enhancers	Osteobl	bone
21	chr4:77899600-77904400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr4:77899600-77905600	Genic enhancers	HSMM	muscle
23	chr4:77899600-77917000	Weak transcription	Colonic Mucosa	Colon
24	chr4:77899800-77903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr4:77899800-77903200	Weak transcription	Stomach Mucosa	stomach
26	chr4:77899800-77903400	Weak transcription	Left Ventricle	heart
27	chr4:77899800-77904200	Weak transcription	Spleen	Spleen
28	chr4:77899800-77905800	Weak transcription	Aorta	Aorta
29	chr4:77899800-77906000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr4:77899800-77915200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr4:77900200-77903200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr4:77900200-77903200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr4:77900200-77903400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr4:77900200-77905600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:77900200-77905600	Weak transcription	NHEK	skin
36	chr4:77900200-77906000	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr4:77900400-77903200	Genic enhancers	NHDF-Ad	bronchial
38	chr4:77900400-77905800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:77900600-77903200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr4:77900600-77904400	Weak transcription	HMEC	breast
41	chr4:77900600-77905400	Weak transcription	Thymus	Thymus
42	chr4:77900600-77906000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:77900600-77909000	Enhancers	Cortex derived primary cultured neurospheres	brain
44	chr4:77900800-77904200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr4:77901200-77904200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr4:77901200-77904800	Enhancers	Small Intestine	intestine
47	chr4:77901400-77903200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:77901400-77903200	Enhancers	Fetal Kidney	kidney
49	chr4:77901400-77903200	Enhancers	Fetal Stomach	stomach
50	chr4:77901400-77903400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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