Variant report

Variant	rs72607860
Chromosome Location	chr4:77911759-77911760
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:77869420..77872512-chr4:77910265..77912250,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138758	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1532449	0.83[EUR][1000 genomes]
rs2645669	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645671	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2645698	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2645702	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2703103	0.83[EUR][1000 genomes]
rs6822843	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607857	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72607858	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73826488	0.83[EUR][1000 genomes]
rs7696359	1.00[EUR][1000 genomes]
rs904045	1.00[EUR][1000 genomes]

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:77893200-77918800	Weak transcription	A549	lung
2	chr4:77899600-77917000	Weak transcription	Colonic Mucosa	Colon
3	chr4:77899800-77915200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr4:77903200-77919800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr4:77903600-77936000	Weak transcription	Esophagus	oesophagus
6	chr4:77904600-77919000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:77906000-77915200	Weak transcription	Brain Substantia Nigra	brain
8	chr4:77906000-77918800	Weak transcription	Brain Hippocampus Middle	brain
9	chr4:77906200-77914600	Weak transcription	Spleen	Spleen
10	chr4:77906400-77917600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:77906600-77912400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr4:77906800-77915200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:77907000-77914600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr4:77907000-77917200	Weak transcription	HepG2	liver
15	chr4:77907200-77915400	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr4:77907200-77917400	Weak transcription	K562	blood
17	chr4:77907400-77912400	Weak transcription	Fetal Heart	heart
18	chr4:77907600-77916800	Weak transcription	Placenta	Placenta
19	chr4:77907800-77918400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr4:77908400-77915400	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:77908400-77917400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr4:77908400-77918000	Weak transcription	Fetal Intestine Large	intestine
23	chr4:77908400-77919400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr4:77908600-77918600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:77908600-77918600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr4:77908800-77912600	Enhancers	Fetal Thymus	thymus
27	chr4:77908800-77917400	Weak transcription	HUVEC	blood vessel
28	chr4:77909000-77914000	Weak transcription	Left Ventricle	heart
29	chr4:77909000-77914600	Weak transcription	Pancreas	Pancrea
30	chr4:77909000-77917200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
31	chr4:77909000-77917400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr4:77909200-77911800	Weak transcription	H9 Cell Line	embryonic stem cell
33	chr4:77909200-77911800	Weak transcription	HUES48 Cell Line	embryonic stem cell
34	chr4:77909200-77914000	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr4:77909200-77914200	Weak transcription	Right Atrium	heart
36	chr4:77909200-77914600	Weak transcription	Fetal Brain Female	brain
37	chr4:77909200-77915400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
38	chr4:77909200-77917000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr4:77909200-77917400	Weak transcription	HUES6 Cell Line	embryonic stem cell
40	chr4:77909200-77917400	Weak transcription	Ovary	ovary
41	chr4:77909200-77917600	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr4:77909200-77917600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:77909200-77918200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr4:77909200-77918200	Weak transcription	Stomach Smooth Muscle	stomach
45	chr4:77909200-77918400	Weak transcription	Liver	Liver
46	chr4:77909200-77918800	Weak transcription	Gastric	stomach
47	chr4:77909200-77919400	Weak transcription	Brain Anterior Caudate	brain
48	chr4:77909400-77911800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr4:77909600-77912000	Enhancers	NH-A	brain
50	chr4:77909600-77912200	Enhancers	Muscle Satellite Cultured Cells	--

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