Variant report
| Variant | rs265580 |
|---|---|
| Chromosome Location | chr12:58490832-58490833 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:2)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:2 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-CTDSP2-4 | chr12:58488697-58491796 | ENSG00000264432.1 |
| 2 | lnc-CTDSP2-4 | chr12:58490532-58491796 | NONHSAT029020 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:17)
| rs_ID | r2[population] |
|---|---|
| rs265572 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265573 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265575 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265582 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265583 | 1.00[EUR][1000 genomes] |
| rs265584 | 1.00[EUR][1000 genomes] |
| rs265585 | 1.00[EUR][1000 genomes] |
| rs265591 | 1.00[EUR][1000 genomes] |
| rs265593 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265595 | 1.00[EUR][1000 genomes] |
| rs2659655 | 1.00[EUR][1000 genomes] |
| rs2659656 | 0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2733440 | 1.00[EUR][1000 genomes] |
| rs2733441 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2733447 | 0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7132079 | 1.00[EUR][1000 genomes] |
| rs991518 | 0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | esv2830232 | chr12:58470456-58498926 | Enhancers Weak transcription Flanking Active TSS Active TSS | TF binding regionChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv729 | chr12:58490094-58535466 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | esv2760225 | chr12:58490832-58514112 | Active TSS Weak transcription Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:58488400-58491800 | Weak transcription | Skeletal Muscle Female | skeletal muscle |
