Variant report

Variant	rs2659656
Chromosome Location	chr12:58515444-58515445
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs265572	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265573	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265575	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265580	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265582	1.00[EUR][1000 genomes]
rs265583	1.00[EUR][1000 genomes]
rs265584	1.00[EUR][1000 genomes]
rs265585	1.00[EUR][1000 genomes]
rs265591	1.00[EUR][1000 genomes]
rs265593	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs265595	1.00[EUR][1000 genomes]
rs2659655	1.00[EUR][1000 genomes]
rs2733440	1.00[EUR][1000 genomes]
rs2733441	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2733447	1.00[EUR][1000 genomes]
rs7132079	1.00[EUR][1000 genomes]
rs991518	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv729	chr12:58490094-58535466	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3332556	chr12:58499734-58525494	Enhancers Active TSS Weak transcription	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a
4	esv3367170	chr12:58500734-58523126	Weak transcription Enhancers Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58514000-58517000	Weak transcription	Ovary	ovary
2	chr12:58514200-58517000	Weak transcription	Psoas Muscle	Psoas

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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