Variant report
| Variant | rs2733440 |
|---|---|
| Chromosome Location | chr12:58501184-58501185 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:24)
| rs_ID | r2[population] |
|---|---|
| rs265572 | 1.00[EUR][1000 genomes] |
| rs265573 | 1.00[EUR][1000 genomes] |
| rs265574 | 0.82[AFR][1000 genomes] |
| rs265575 | 1.00[EUR][1000 genomes] |
| rs265576 | 0.83[AFR][1000 genomes] |
| rs265578 | 0.92[AFR][1000 genomes] |
| rs265580 | 1.00[EUR][1000 genomes] |
| rs265581 | 0.92[AFR][1000 genomes] |
| rs265582 | 0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265583 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265584 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265585 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265591 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs265592 | 0.94[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs265593 | 1.00[EUR][1000 genomes] |
| rs265594 | 0.96[AFR][1000 genomes];0.87[AMR][1000 genomes] |
| rs265595 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2659655 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs2659656 | 1.00[EUR][1000 genomes] |
| rs2733441 | 1.00[EUR][1000 genomes] |
| rs2733447 | 1.00[EUR][1000 genomes] |
| rs7132079 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7973502 | 0.82[AFR][1000 genomes] |
| rs991518 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899124 | chr12:58391839-58883507 | Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| 2 | nsv729 | chr12:58490094-58535466 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats | Chromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | esv2760225 | chr12:58490832-58514112 | Active TSS Weak transcription Enhancers Flanking Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | esv3332556 | chr12:58499734-58525494 | Enhancers Active TSS Weak transcription | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| 5 | esv3367170 | chr12:58500734-58523126 | Weak transcription Enhancers Active TSS | Chromatin interactive region | 4 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:58500600-58501200 | Enhancers | Skeletal Muscle Female | skeletal muscle |
