Variant report

Variant	rs2661788
Chromosome Location	chr4:144335724-144335725
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144326817..144330491-chr4:144331809..144335886,3	K562	blood:

rs_ID	r²[population]
rs1397527	0.83[YRI][hapmap]
rs17017745	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs2323011	1.00[CEU][hapmap]
rs2666350	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28925882	1.00[EUR][1000 genomes]
rs28925887	1.00[EUR][1000 genomes]
rs745164	1.00[CEU][hapmap]
rs837449	0.94[YRI][hapmap]

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:144318200-144337000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:144319200-144336600	Weak transcription	Fetal Kidney	kidney
5	chr4:144323200-144335800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr4:144324800-144336800	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:144326000-144336600	Weak transcription	Placenta	Placenta
8	chr4:144326200-144337200	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:144326600-144336600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr4:144327200-144337200	Weak transcription	Fetal Intestine Small	intestine
11	chr4:144327600-144337800	Weak transcription	Colonic Mucosa	Colon
12	chr4:144327800-144361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:144327800-144388200	Weak transcription	HepG2	liver
14	chr4:144328000-144336400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr4:144328000-144338600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:144328000-144338800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr4:144328000-144346400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr4:144328000-144359200	Weak transcription	Esophagus	oesophagus
19	chr4:144328600-144337000	Weak transcription	Liver	Liver
20	chr4:144328800-144340000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr4:144329000-144336600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
22	chr4:144329000-144359400	Weak transcription	K562	blood
23	chr4:144329200-144338200	Weak transcription	Primary B cells from cord blood	blood
24	chr4:144329400-144336200	Weak transcription	Primary hematopoietic stem cells	blood
25	chr4:144329400-144336400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:144329400-144337200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:144329400-144338600	Weak transcription	Primary B cells from peripheral blood	blood
28	chr4:144329800-144336400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr4:144329800-144336600	Weak transcription	Fetal Lung	lung
30	chr4:144329800-144352600	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr4:144332000-144337600	Weak transcription	HUES48 Cell Line	embryonic stem cell
32	chr4:144332200-144336400	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr4:144332400-144337400	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr4:144332400-144337600	Weak transcription	Lung	lung
35	chr4:144332400-144359200	Weak transcription	Pancreas	Pancrea
36	chr4:144332800-144337600	Weak transcription	Left Ventricle	heart
37	chr4:144332800-144338000	Weak transcription	Placenta Amnion	Placenta Amnion
38	chr4:144332800-144359200	Weak transcription	HMEC	breast
39	chr4:144333000-144336600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr4:144333000-144336800	Enhancers	Brain Anterior Caudate	brain
41	chr4:144333000-144337400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:144333000-144337800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr4:144333000-144346200	Weak transcription	Ovary	ovary
44	chr4:144333000-144346400	Weak transcription	Rectal Smooth Muscle	rectum
45	chr4:144333000-144358800	Weak transcription	Right Ventricle	heart
46	chr4:144333000-144364600	Weak transcription	NHEK	skin
47	chr4:144333200-144336200	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr4:144333200-144336600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr4:144333200-144336800	Enhancers	Brain Substantia Nigra	brain
50	chr4:144333200-144341200	Weak transcription	HSMM	muscle

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