Variant report

Variant	rs1397527
Chromosome Location	chr4:144326385-144326386
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:144319058..144322958-chr4:144324653..144327477,4	K562	blood:
2	chr4:144325793..144327781-chr4:144331257..144333636,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs1027851	0.82[AMR][1000 genomes]
rs11100786	0.83[AMR][1000 genomes]
rs11100787	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs11100788	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11945731	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12649592	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs13101346	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1397526	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1510879	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1510880	0.80[CHD][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2119270	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2196908	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2196909	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2661788	0.83[YRI][hapmap]
rs2666350	0.83[YRI][hapmap]
rs34095331	0.83[ASN][1000 genomes]
rs34439737	0.82[ASN][1000 genomes]
rs3792653	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3805238	0.82[ASN][1000 genomes]
rs3805245	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3805251	0.80[CHD][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3805252	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3805253	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3805256	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs3828512	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs3828514	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6537155	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs719392	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7680959	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs837449	0.88[YRI][hapmap]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
2	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
3	chr4:144312600-144326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr4:144312600-144328600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr4:144312800-144331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:144313800-144332000	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr4:144317400-144327600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr4:144318200-144327600	Weak transcription	K562	blood
10	chr4:144318200-144337000	Weak transcription	Fetal Intestine Large	intestine
11	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr4:144319200-144336600	Weak transcription	Fetal Kidney	kidney
13	chr4:144320600-144328600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr4:144320800-144326600	Weak transcription	Stomach Mucosa	stomach
15	chr4:144321000-144327600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr4:144321800-144330200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:144322200-144334000	Enhancers	Fetal Heart	heart
18	chr4:144323000-144326400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr4:144323200-144335800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:144323400-144327600	Enhancers	Colon Smooth Muscle	Colon
21	chr4:144323400-144328400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr4:144323400-144330400	Enhancers	HUVEC	blood vessel
23	chr4:144323600-144328000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr4:144323600-144328200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr4:144323600-144328200	Enhancers	Ovary	ovary
26	chr4:144323600-144328600	Enhancers	Liver	Liver
27	chr4:144324000-144326400	Enhancers	Primary hematopoietic stem cells short term culture	blood
28	chr4:144324000-144327000	Flanking Active TSS	Primary B cells from cord blood	blood
29	chr4:144324000-144332400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
30	chr4:144324200-144326600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr4:144324400-144326600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr4:144324400-144326600	Enhancers	Duodenum Mucosa	Duodenum
33	chr4:144324600-144326800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr4:144324600-144327600	Weak transcription	Fetal Lung	lung
35	chr4:144324600-144332800	Weak transcription	HSMM	muscle
36	chr4:144324800-144326400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr4:144324800-144326600	Enhancers	Brain Substantia Nigra	brain
38	chr4:144324800-144326800	Weak transcription	Small Intestine	intestine
39	chr4:144324800-144327400	Enhancers	Adipose Nuclei	Adipose
40	chr4:144324800-144327400	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:144324800-144327600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr4:144324800-144327600	Weak transcription	Fetal Stomach	stomach
43	chr4:144324800-144329000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:144324800-144330200	Enhancers	Rectal Smooth Muscle	rectum
45	chr4:144324800-144331800	Enhancers	Brain Anterior Caudate	brain
46	chr4:144324800-144332200	Enhancers	Brain Hippocampus Middle	brain
47	chr4:144324800-144332400	Enhancers	Brain Angular Gyrus	brain
48	chr4:144324800-144333200	Weak transcription	Fetal Brain Female	brain
49	chr4:144324800-144336800	Weak transcription	Rectal Mucosa Donor 29	rectum
50	chr4:144325000-144327400	Enhancers	Brain Inferior Temporal Lobe	brain

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