Variant report

Variant	rs11945731
Chromosome Location	chr4:144321254-144321255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144318802..144321618-chr4:144327773..144329836,3	MCF-7	breast:
2	chr4:144319058..144322958-chr4:144324653..144327477,4	K562	blood:
3	chr4:144316831..144319200-chr4:144321002..144323147,2	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10013047	0.91[ASN][1000 genomes]
rs1027851	0.84[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1027852	0.91[ASN][1000 genomes]
rs10519691	0.82[ASN][1000 genomes]
rs11100786	0.85[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs11100787	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs11100788	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11100789	0.89[ASN][1000 genomes]
rs11730569	0.90[ASN][1000 genomes]
rs12647531	0.90[ASN][1000 genomes]
rs12649592	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13101346	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13123498	0.93[ASN][1000 genomes]
rs1397526	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1397527	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1397528	0.83[ASN][1000 genomes]
rs1472873	0.90[ASN][1000 genomes]
rs1510879	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1510880	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1866756	0.91[ASN][1000 genomes]
rs2048408	0.93[ASN][1000 genomes]
rs2055730	0.90[ASN][1000 genomes]
rs2119270	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2196908	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2196909	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs300910	0.82[ASN][1000 genomes]
rs300911	0.80[ASN][1000 genomes]
rs300912	0.80[ASN][1000 genomes]
rs300913	0.80[ASN][1000 genomes]
rs300914	0.80[ASN][1000 genomes]
rs300915	0.80[ASN][1000 genomes]
rs34095331	0.93[ASN][1000 genomes]
rs34439737	0.97[ASN][1000 genomes]
rs3792652	0.91[ASN][1000 genomes]
rs3792653	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3792655	0.90[ASN][1000 genomes]
rs3805238	0.92[ASN][1000 genomes]
rs3805245	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3805246	0.90[ASN][1000 genomes]
rs3805247	0.91[ASN][1000 genomes]
rs3805249	0.90[ASN][1000 genomes]
rs3805251	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805252	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805253	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3805254	0.90[ASN][1000 genomes]
rs3805256	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs3805257	0.89[ASN][1000 genomes]
rs3828512	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs3828513	0.90[ASN][1000 genomes]
rs3828514	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55758499	0.90[ASN][1000 genomes]
rs55894236	0.90[ASN][1000 genomes]
rs6537154	0.91[ASN][1000 genomes]
rs6537155	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs713140	0.92[ASN][1000 genomes]
rs719392	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7679870	0.80[AMR][1000 genomes]
rs7680959	0.85[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs906571	0.90[ASN][1000 genomes]

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
2	chr4:144307400-144323600	Enhancers	Brain Hippocampus Middle	brain
3	chr4:144309200-144327600	Weak transcription	Esophagus	oesophagus
4	chr4:144310200-144325600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr4:144311600-144321600	Enhancers	Brain Angular Gyrus	brain
6	chr4:144312400-144323600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:144312600-144323800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr4:144312600-144326400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
9	chr4:144312600-144328600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr4:144312800-144324000	Weak transcription	Fetal Intestine Small	intestine
11	chr4:144312800-144331400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
13	chr4:144313000-144323800	Weak transcription	Fetal Muscle Leg	muscle
14	chr4:144313400-144323000	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr4:144313400-144323400	Weak transcription	Fetal Brain Female	brain
16	chr4:144313400-144323600	Weak transcription	Primary hematopoietic stem cells	blood
17	chr4:144313400-144324000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr4:144313800-144323400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:144313800-144323600	Weak transcription	Liver	Liver
20	chr4:144313800-144332000	Weak transcription	Placenta Amnion	Placenta Amnion
21	chr4:144314400-144321400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr4:144314600-144321800	Enhancers	Fetal Heart	heart
23	chr4:144314600-144323400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:144315600-144323600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr4:144316200-144323400	Weak transcription	Adipose Nuclei	Adipose
26	chr4:144316200-144323600	Weak transcription	Small Intestine	intestine
27	chr4:144316800-144324400	Enhancers	Brain Substantia Nigra	brain
28	chr4:144317400-144323600	Weak transcription	Primary B cells from cord blood	blood
29	chr4:144317400-144323800	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:144317400-144327600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr4:144317600-144323400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr4:144317800-144325800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr4:144318200-144325600	Weak transcription	Lung	lung
34	chr4:144318200-144327600	Weak transcription	K562	blood
35	chr4:144318200-144337000	Weak transcription	Fetal Intestine Large	intestine
36	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
37	chr4:144319200-144323400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
38	chr4:144319200-144323400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr4:144319200-144323400	Weak transcription	HSMMtube	muscle
40	chr4:144319200-144323800	Weak transcription	Rectal Smooth Muscle	rectum
41	chr4:144319200-144324800	Weak transcription	Stomach Smooth Muscle	stomach
42	chr4:144319200-144336600	Weak transcription	Fetal Kidney	kidney
43	chr4:144319400-144323600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr4:144319400-144323600	Weak transcription	NHDF-Ad	bronchial
45	chr4:144319400-144324000	Weak transcription	HSMM	muscle
46	chr4:144319800-144323600	Weak transcription	Fetal Lung	lung
47	chr4:144319800-144323800	Weak transcription	Fetal Stomach	stomach
48	chr4:144320000-144321600	Enhancers	Skeletal Muscle Male	skeletal muscle
49	chr4:144320000-144325600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:144320200-144323400	Weak transcription	Colon Smooth Muscle	Colon

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