Variant report

Variant	rs34095331
Chromosome Location	chr4:144331671-144331672
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:144331573-144331735	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:144325793..144327781-chr4:144331257..144333636,2	K562	blood:
2	chr4:144323082..144326109-chr4:144328111..144333169,4	K562	blood:
3	chr4:144331208..144333292-chr4:144334225..144336721,2	MCF-7	breast:

Variant related genes	Relation type
GAB1	TF binding region
ENSG00000109458	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10013047	0.88[ASN][1000 genomes]
rs1027851	0.87[ASN][1000 genomes]
rs1027852	0.88[ASN][1000 genomes]
rs10519691	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11100786	0.87[ASN][1000 genomes]
rs11100787	0.88[ASN][1000 genomes]
rs11100788	0.89[ASN][1000 genomes]
rs11100789	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs11730569	0.88[ASN][1000 genomes]
rs11945731	0.93[ASN][1000 genomes]
rs12647531	0.88[ASN][1000 genomes]
rs12649592	0.87[ASN][1000 genomes]
rs13101346	0.85[ASN][1000 genomes]
rs13123498	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1397526	0.98[ASN][1000 genomes]
rs1397527	0.83[ASN][1000 genomes]
rs1397528	0.80[ASN][1000 genomes]
rs1472873	0.88[ASN][1000 genomes]
rs1510879	0.93[ASN][1000 genomes]
rs1510880	0.87[ASN][1000 genomes]
rs17017757	0.84[AFR][1000 genomes]
rs1866756	0.88[ASN][1000 genomes]
rs2048408	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2055730	0.88[ASN][1000 genomes]
rs2119270	0.87[ASN][1000 genomes]
rs2196908	0.85[ASN][1000 genomes]
rs2196909	0.85[ASN][1000 genomes]
rs34439737	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3792652	0.88[ASN][1000 genomes]
rs3792653	0.87[ASN][1000 genomes]
rs3792655	0.88[ASN][1000 genomes]
rs3805238	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805245	0.87[ASN][1000 genomes]
rs3805246	0.88[ASN][1000 genomes]
rs3805247	0.88[ASN][1000 genomes]
rs3805249	0.88[ASN][1000 genomes]
rs3805251	0.87[ASN][1000 genomes]
rs3805252	0.87[ASN][1000 genomes]
rs3805253	0.87[ASN][1000 genomes]
rs3805254	0.88[ASN][1000 genomes]
rs3805256	0.85[ASN][1000 genomes]
rs3805257	0.86[ASN][1000 genomes]
rs3828512	0.89[ASN][1000 genomes]
rs3828513	0.88[ASN][1000 genomes]
rs3828514	0.87[ASN][1000 genomes]
rs55758499	0.88[ASN][1000 genomes]
rs55894236	0.88[ASN][1000 genomes]
rs6537154	0.86[ASN][1000 genomes]
rs6537155	0.87[ASN][1000 genomes]
rs713140	0.89[ASN][1000 genomes]
rs719392	0.85[ASN][1000 genomes]
rs7680959	0.88[ASN][1000 genomes]
rs906571	0.88[ASN][1000 genomes]

No data

Chromatin state (count:87 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144312800-144336800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:144313800-144332000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:144318200-144337000	Weak transcription	Fetal Intestine Large	intestine
4	chr4:144318200-144362400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:144319200-144336600	Weak transcription	Fetal Kidney	kidney
6	chr4:144322200-144334000	Enhancers	Fetal Heart	heart
7	chr4:144323200-144335800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:144324000-144332400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
9	chr4:144324600-144332800	Weak transcription	HSMM	muscle
10	chr4:144324800-144331800	Enhancers	Brain Anterior Caudate	brain
11	chr4:144324800-144332200	Enhancers	Brain Hippocampus Middle	brain
12	chr4:144324800-144332400	Enhancers	Brain Angular Gyrus	brain
13	chr4:144324800-144333200	Weak transcription	Fetal Brain Female	brain
14	chr4:144324800-144336800	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr4:144325800-144331800	Weak transcription	HSMMtube	muscle
16	chr4:144326000-144332000	Weak transcription	Aorta	Aorta
17	chr4:144326000-144336600	Weak transcription	Placenta	Placenta
18	chr4:144326200-144337200	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr4:144326600-144336600	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr4:144326800-144333400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr4:144327200-144337200	Weak transcription	Fetal Intestine Small	intestine
22	chr4:144327400-144332800	Enhancers	Brain Substantia Nigra	brain
23	chr4:144327600-144337800	Weak transcription	Colonic Mucosa	Colon
24	chr4:144327800-144332000	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr4:144327800-144361200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr4:144327800-144388200	Weak transcription	HepG2	liver
27	chr4:144328000-144332000	Weak transcription	Gastric	stomach
28	chr4:144328000-144332000	Weak transcription	Lung	lung
29	chr4:144328000-144332000	Weak transcription	Pancreas	Pancrea
30	chr4:144328000-144332000	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr4:144328000-144332200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr4:144328000-144332600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr4:144328000-144333000	Weak transcription	Stomach Mucosa	stomach
34	chr4:144328000-144333600	Enhancers	Colon Smooth Muscle	Colon
35	chr4:144328000-144336400	Weak transcription	Duodenum Mucosa	Duodenum
36	chr4:144328000-144338600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr4:144328000-144338800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr4:144328000-144346400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr4:144328000-144359200	Weak transcription	Esophagus	oesophagus
40	chr4:144328200-144332000	Weak transcription	Fetal Muscle Leg	muscle
41	chr4:144328200-144332000	Weak transcription	Ovary	ovary
42	chr4:144328200-144332200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr4:144328200-144332800	Weak transcription	Fetal Stomach	stomach
44	chr4:144328200-144333200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr4:144328600-144331800	Weak transcription	Rectal Mucosa Donor 31	rectum
46	chr4:144328600-144337000	Weak transcription	Liver	Liver
47	chr4:144328800-144332000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr4:144328800-144332200	Weak transcription	NHLF	lung
49	chr4:144328800-144340000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr4:144329000-144332000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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