Variant report

Variant	rs10013047
Chromosome Location	chr4:144308027-144308028
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr4:144307994-144308411	HepG2	liver:	n/a	n/a
2	TEAD4	chr4:144307943-144308422	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr4:144307947..144309781-chr4:144310910..144313103,2	K562	blood:
2	chr4:144301169..144303738-chr4:144307598..144309127,2	K562	blood:
3	chr4:144257977..144259931-chr4:144307446..144310304,2	MCF-7	breast:
4	chr4:144300243..144304529-chr4:144305070..144308118,4	K562	blood:

Variant related genes	Relation type
GAB1	TF binding region
ENSG00000109458	Chromatin interaction
ENSG00000178972	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1027851	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1027852	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11100786	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11100787	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11100788	0.96[ASN][1000 genomes]
rs11100789	0.85[ASN][1000 genomes]
rs11730569	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11945731	0.91[ASN][1000 genomes]
rs12647531	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12649592	0.98[ASN][1000 genomes]
rs13101346	0.96[ASN][1000 genomes]
rs13123498	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1397526	0.87[ASN][1000 genomes]
rs1397528	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1472873	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1510879	0.91[ASN][1000 genomes]
rs1510880	0.98[ASN][1000 genomes]
rs1866756	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048408	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2055730	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2119270	0.98[ASN][1000 genomes]
rs2196908	0.96[ASN][1000 genomes]
rs2196909	0.96[ASN][1000 genomes]
rs300910	0.87[ASN][1000 genomes]
rs300911	0.87[ASN][1000 genomes]
rs300912	0.87[ASN][1000 genomes]
rs300913	0.87[ASN][1000 genomes]
rs300914	0.87[ASN][1000 genomes]
rs300915	0.87[ASN][1000 genomes]
rs300916	0.82[ASN][1000 genomes]
rs300917	0.83[ASN][1000 genomes]
rs300918	0.83[ASN][1000 genomes]
rs34095331	0.88[ASN][1000 genomes]
rs34439737	0.92[ASN][1000 genomes]
rs3792652	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3792653	0.98[ASN][1000 genomes]
rs3792655	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805238	0.88[ASN][1000 genomes]
rs3805245	0.98[ASN][1000 genomes]
rs3805246	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805247	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3805249	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805251	0.98[ASN][1000 genomes]
rs3805252	0.98[ASN][1000 genomes]
rs3805253	0.98[ASN][1000 genomes]
rs3805254	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3805256	0.96[ASN][1000 genomes]
rs3805257	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3828512	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3828513	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3828514	0.98[ASN][1000 genomes]
rs55758499	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55894236	0.99[ASN][1000 genomes]
rs6537154	0.97[ASN][1000 genomes]
rs6537155	0.98[ASN][1000 genomes]
rs713140	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs719392	0.96[ASN][1000 genomes]
rs7680959	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs906571	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144302800-144312600	Weak transcription	Placenta	Placenta
2	chr4:144303000-144312000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr4:144303000-144318000	Weak transcription	HSMM	muscle
4	chr4:144303200-144308200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:144303200-144311800	Weak transcription	Brain Germinal Matrix	brain
6	chr4:144303200-144312000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr4:144303200-144317800	Weak transcription	Gastric	stomach
8	chr4:144303400-144308600	Weak transcription	HepG2	liver
9	chr4:144303400-144312000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr4:144303400-144312600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr4:144303400-144326600	Weak transcription	Colonic Mucosa	Colon
12	chr4:144303800-144308600	Weak transcription	Fetal Brain Female	brain
13	chr4:144304000-144308600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:144304000-144310200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
15	chr4:144304000-144310600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr4:144304000-144310600	Weak transcription	Hela-S3	cervix
17	chr4:144304200-144308400	Weak transcription	Stomach Mucosa	stomach
18	chr4:144304200-144320000	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr4:144304400-144308400	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr4:144304400-144309600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr4:144304400-144312000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:144304600-144308600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr4:144304600-144310000	Weak transcription	HMEC	breast
24	chr4:144304600-144310000	Weak transcription	NHEK	skin
25	chr4:144304600-144311200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr4:144304600-144312600	Weak transcription	HSMMtube	muscle
27	chr4:144304600-144317000	Weak transcription	K562	blood
28	chr4:144305200-144310200	Weak transcription	Liver	Liver
29	chr4:144305200-144311000	Weak transcription	Primary monocytes fromperipheralblood	blood
30	chr4:144305200-144311800	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr4:144305200-144311800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:144305600-144309400	Enhancers	Brain Anterior Caudate	brain
33	chr4:144305800-144308200	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr4:144305800-144310600	Weak transcription	Fetal Stomach	stomach
35	chr4:144306000-144308400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr4:144306000-144308400	Weak transcription	Right Atrium	heart
37	chr4:144306000-144308600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr4:144306000-144308600	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr4:144306000-144308600	Weak transcription	Right Ventricle	heart
40	chr4:144306000-144308800	Weak transcription	Esophagus	oesophagus
41	chr4:144306000-144310000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
42	chr4:144306000-144312000	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:144306000-144312000	Weak transcription	Fetal Muscle Leg	muscle
44	chr4:144306000-144312000	Weak transcription	Pancreas	Pancrea
45	chr4:144306200-144308200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr4:144306200-144308400	Weak transcription	Ovary	ovary
47	chr4:144306200-144310200	Weak transcription	Muscle Satellite Cultured Cells	--
48	chr4:144306200-144311000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:144306200-144311200	Enhancers	Brain Angular Gyrus	brain
50	chr4:144306400-144310000	Weak transcription	Osteobl	bone

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