Variant report

Variant	rs7679870
Chromosome Location	chr4:144286242-144286243
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144284857..144287398-chr4:144288484..144291385,2	K562	blood:
2	chr4:144283863..144286903-chr4:144287176..144291126,4	K562	blood:
3	chr4:144280022..144283375-chr4:144285064..144288406,3	K562	blood:
4	chr4:144257678..144260213-chr4:144284163..144287062,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction
ENSG00000178972	Chromatin interaction

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1027851	0.80[AMR][1000 genomes]
rs11100788	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11945731	0.80[AMR][1000 genomes]
rs12649592	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs13101346	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1510879	0.80[AMR][1000 genomes]
rs1510880	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2119270	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2196908	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2196909	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3792653	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3805245	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3805251	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805252	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805253	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs3805256	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs3828514	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6537155	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs719392	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018566	chr4:144284927-144298930	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv437941	chr4:144285683-144295952	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144272800-144299800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:144277200-144290400	Weak transcription	Pancreas	Pancrea
3	chr4:144277400-144296800	Weak transcription	HSMMtube	muscle
4	chr4:144281200-144290000	Weak transcription	Fetal Stomach	stomach
5	chr4:144281200-144296800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:144281400-144296800	Weak transcription	Fetal Kidney	kidney
7	chr4:144281800-144293400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:144282000-144291200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:144282800-144290600	Weak transcription	Fetal Lung	lung
10	chr4:144283000-144286400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr4:144283000-144290600	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:144283000-144290800	Weak transcription	Primary B cells from cord blood	blood
13	chr4:144283000-144290800	Weak transcription	Gastric	stomach
14	chr4:144283000-144291200	Weak transcription	Ovary	ovary
15	chr4:144283000-144293400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:144283000-144295400	Weak transcription	Stomach Smooth Muscle	stomach
17	chr4:144283000-144302200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr4:144283200-144293400	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr4:144284000-144293600	Weak transcription	Spleen	Spleen
20	chr4:144284000-144296600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:144284000-144296600	Weak transcription	Fetal Thymus	thymus
22	chr4:144284200-144286400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr4:144284200-144287000	Weak transcription	Brain Anterior Caudate	brain
24	chr4:144284200-144295600	Weak transcription	Duodenum Mucosa	Duodenum
25	chr4:144284400-144290600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr4:144284400-144299400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr4:144284600-144288000	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr4:144284600-144290000	Weak transcription	Rectal Mucosa Donor 31	rectum
29	chr4:144284600-144290000	Weak transcription	Sigmoid Colon	Sigmoid Colon
30	chr4:144284600-144290800	Weak transcription	Fetal Intestine Large	intestine
31	chr4:144284600-144291200	Weak transcription	Fetal Intestine Small	intestine
32	chr4:144284600-144295200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr4:144284600-144295200	Weak transcription	K562	blood
34	chr4:144284800-144290000	Weak transcription	Brain Angular Gyrus	brain
35	chr4:144284800-144295600	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr4:144285000-144290000	Weak transcription	Small Intestine	intestine
37	chr4:144285000-144290400	Weak transcription	Skeletal Muscle Male	skeletal muscle
38	chr4:144285000-144290800	Weak transcription	Right Ventricle	heart
39	chr4:144285200-144287800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr4:144285200-144290000	Weak transcription	Left Ventricle	heart
41	chr4:144285200-144290000	Weak transcription	Lung	lung
42	chr4:144285200-144290000	Weak transcription	Psoas Muscle	Psoas
43	chr4:144285200-144290000	Weak transcription	Right Atrium	heart
44	chr4:144285200-144290600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr4:144285400-144286400	Weak transcription	Fetal Heart	heart
46	chr4:144285400-144290000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr4:144285800-144286600	Weak transcription	Colon Smooth Muscle	Colon
48	chr4:144285800-144288000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr4:144286000-144286400	Weak transcription	Brain Hippocampus Middle	brain
50	chr4:144286000-144287800	Weak transcription	Brain Cingulate Gyrus	brain

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