Variant report
Variant | rs2669053 |
---|---|
Chromosome Location | chr1:216552091-216552092 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:216547713..216550366-chr1:216550786..216552777,2 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10864238 | 0.87[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap] |
rs10864239 | 0.87[CHB][hapmap];0.81[CHD][hapmap];0.88[JPT][hapmap] |
rs11117565 | 1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs11117568 | 0.91[CEU][hapmap] |
rs11120758 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs11120762 | 0.87[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap] |
rs11590382 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap] |
rs1339962 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
rs1339963 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs1355630 | 0.87[CHB][hapmap];0.82[JPT][hapmap] |
rs1538691 | 1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.89[MKK][hapmap];1.00[YRI][hapmap] |
rs1588657 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs2669050 | 0.88[ASW][hapmap];0.87[MEX][hapmap] |
rs2791292 | 0.95[CEU][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
rs2809296 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs2809299 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs4078266 | 0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap] |
rs4253963 | 0.81[GIH][hapmap];0.87[MEX][hapmap];0.86[TSI][hapmap];0.82[EUR][1000 genomes] |
rs4323773 | 1.00[CHB][hapmap];0.88[CHD][hapmap];0.81[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];0.86[TSI][hapmap];0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs4396173 | 0.87[CHB][hapmap] |
rs4488081 | 0.86[CEU][hapmap];0.90[GIH][hapmap] |
rs4531347 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs4575147 | 0.91[CEU][hapmap];0.94[CHB][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap] |
rs4846422 | 0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
rs4846428 | 0.91[CEU][hapmap];0.87[EUR][1000 genomes] |
rs6604658 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs6660228 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs6664755 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs7518771 | 0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7521264 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
rs7534756 | 0.85[ASN][1000 genomes] |
rs7539376 | 0.86[CHB][hapmap];1.00[JPT][hapmap] |
rs7539597 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |
rs7550759 | 0.83[MEX][hapmap] |
rs955942 | 1.00[ASW][hapmap];1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs974601 | 0.87[CHB][hapmap];1.00[JPT][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
3 | nsv549199 | chr1:216384908-216814702 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1003815 | chr1:216504235-216836498 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
5 | nsv535289 | chr1:216504235-216836498 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
6 | nsv523863 | chr1:216517635-216629416 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |