Variant report
Variant | rs4396173 |
---|---|
Chromosome Location | chr1:216594396-216594397 |
allele | A/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr1:216593418..216595910-chr1:216597223..216598829,2 | K562 | blood: |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs10779261 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10863240 | 0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs11117565 | 0.86[CHB][hapmap];0.86[ASN][1000 genomes] |
rs11117568 | 0.86[CHB][hapmap] |
rs11117569 | 0.86[CEU][hapmap];0.86[CHB][hapmap] |
rs11117573 | 0.83[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.83[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs11117574 | 0.81[AMR][1000 genomes];0.99[ASN][1000 genomes] |
rs11117575 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11117576 | 1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11590382 | 0.92[CHB][hapmap] |
rs1538691 | 0.87[CHB][hapmap] |
rs2669051 | 0.81[CEU][hapmap];0.86[CHB][hapmap] |
rs2669052 | 0.86[CHB][hapmap];1.00[YRI][hapmap] |
rs2669053 | 0.87[CHB][hapmap] |
rs2669056 | 0.81[CEU][hapmap];0.86[CHB][hapmap];0.87[YRI][hapmap] |
rs2791292 | 0.86[CHB][hapmap];0.86[ASN][1000 genomes] |
rs2809295 | 0.86[CHB][hapmap] |
rs2809296 | 0.88[CHB][hapmap] |
rs2809300 | 0.81[CEU][hapmap];0.86[CHB][hapmap] |
rs4078266 | 0.87[CHB][hapmap] |
rs4253963 | 0.81[CEU][hapmap];0.86[CHB][hapmap];0.96[ASN][1000 genomes] |
rs4314947 | 0.83[CEU][hapmap] |
rs4323773 | 0.81[CEU][hapmap];0.87[CHB][hapmap] |
rs4350256 | 0.83[CHB][hapmap] |
rs4420153 | 0.84[CEU][hapmap];0.86[CHB][hapmap] |
rs4431908 | 0.86[CEU][hapmap];0.86[CHB][hapmap] |
rs4443953 | 0.86[CHB][hapmap];0.87[YRI][hapmap] |
rs4488081 | 0.86[CHB][hapmap] |
rs4531347 | 0.88[CHB][hapmap] |
rs4575147 | 0.82[CHB][hapmap] |
rs4846422 | 0.88[CHB][hapmap] |
rs4846428 | 0.86[CHB][hapmap];0.95[ASN][1000 genomes] |
rs6604551 | 0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs6604553 | 0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes] |
rs6664755 | 0.81[CEU][hapmap];0.88[CHB][hapmap] |
rs7534756 | 0.97[EUR][1000 genomes] |
rs7539503 | 0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs7544306 | 0.81[CEU][hapmap];0.86[CHB][hapmap] |
rs7550759 | 0.84[CEU][hapmap];0.86[CHB][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1006504 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
2 | nsv535288 | chr1:215890460-216642124 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
3 | nsv549199 | chr1:216384908-216814702 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
4 | nsv1003815 | chr1:216504235-216836498 | Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
5 | nsv535289 | chr1:216504235-216836498 | Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive region | 4 gene(s) | inside rSNPs | diseases |
6 | nsv523863 | chr1:216517635-216629416 | Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr1:216590600-216595400 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
2 | chr1:216593400-216596000 | Enhancers | Liver | Liver |