Variant report

Variant	rs4078266
Chromosome Location	chr1:216570944-216570945
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10863240	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10864238	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs10864239	0.87[CHB][hapmap];0.88[JPT][hapmap]
rs11117565	0.90[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11117568	1.00[CEU][hapmap]
rs11117573	0.86[CEU][hapmap];0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11117574	0.84[EUR][1000 genomes]
rs11120758	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11120762	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs11590382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1339962	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1339963	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs1355630	0.87[CHB][hapmap];0.82[JPT][hapmap]
rs1538691	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.83[MEX][hapmap]
rs1588657	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs2669050	0.87[MEX][hapmap]
rs2669053	0.91[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.86[TSI][hapmap]
rs2791292	0.86[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2809296	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2809299	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs4253963	0.86[CEU][hapmap];0.85[GIH][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4323773	0.88[ASW][hapmap];0.86[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.85[GIH][hapmap];0.88[JPT][hapmap];0.82[MEX][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4396173	0.87[CHB][hapmap]
rs4420153	0.83[MEX][hapmap]
rs4488081	0.95[CEU][hapmap];0.95[GIH][hapmap];0.87[MEX][hapmap];0.81[TSI][hapmap]
rs4531347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4575147	1.00[ASW][hapmap];1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.88[LWK][hapmap];0.95[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs4846422	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs4846428	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6604658	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6660228	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs6664755	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7518771	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7521264	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7534756	0.92[ASN][1000 genomes]
rs7539376	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs7539597	0.87[CHB][hapmap];1.00[JPT][hapmap]
rs7550759	0.84[ASW][hapmap];0.91[MEX][hapmap]
rs955942	0.91[CEU][hapmap];0.93[CHB][hapmap];0.94[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.86[TSI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs974601	0.87[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006504	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	nsv535288	chr1:215890460-216642124	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv549199	chr1:216384908-216814702	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv1003815	chr1:216504235-216836498	Active TSS Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
5	nsv535289	chr1:216504235-216836498	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv523863	chr1:216517635-216629416	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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