Variant report

Variant	rs2681699
Chromosome Location	chr3:141501812-141501813
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs13065327	0.91[EUR][1000 genomes]
rs13065862	1.00[CEU][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13076009	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs13085196	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2138790	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2681692	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2681693	0.85[EUR][1000 genomes]
rs2681700	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33928105	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34902798	0.91[EUR][1000 genomes]
rs35026516	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35204030	0.91[EUR][1000 genomes]
rs35249682	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35355622	0.91[EUR][1000 genomes]
rs35652193	0.91[EUR][1000 genomes]
rs36009541	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs55769955	0.91[EUR][1000 genomes]
rs71304105	0.90[EUR][1000 genomes]
rs73226676	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2681699	TFDP2	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141497800-141505800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr3:141501400-141502000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:141501800-141503400	Enhancers	Adipose Nuclei	Adipose

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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