Variant report

No.	Distal block	Cell Line	Cell type
1	chr3:141510389..141512648-chr3:141516090..141517721,2	K562	blood:
2	chr3:141509966..141511631-chr3:141513470..141515966,2	MCF-7	breast:
3	chr3:141509290..141512769-chr3:141513263..141515246,3	K562	blood:
4	chr3:141510432..141513238-chr3:141595470..141596991,2	K562	blood:
5	chr3:141509980..141511814-chr3:141533732..141536683,2	K562	blood:

Variant related genes	Relation type
ENSG00000069849	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs13065327	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13065862	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13071985	0.81[EUR][1000 genomes]
rs13076009	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13085196	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2138790	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2681693	0.88[EUR][1000 genomes]
rs2681699	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2681700	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs33928105	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34902798	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35026516	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35204030	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35249682	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35355622	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35652193	0.80[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35805003	0.83[EUR][1000 genomes]
rs36009541	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs55769955	0.95[EUR][1000 genomes]
rs56361763	0.80[EUR][1000 genomes]
rs71304105	0.94[EUR][1000 genomes]
rs73226676	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141504200-141512800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr3:141508600-141511800	Weak transcription	Thymus	Thymus
3	chr3:141510400-141515400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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