Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141534887..141537678-chr3:141541088..141543336,3	K562	blood:
2	chr3:141457369..141459692-chr3:141539013..141541965,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs13065327	0.86[EUR][1000 genomes]
rs13065862	0.81[CEU][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs13076009	0.84[EUR][1000 genomes]
rs13085196	1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs16851803	0.81[ASN][1000 genomes]
rs2138790	0.80[EUR][1000 genomes]
rs2681692	0.81[EUR][1000 genomes]
rs2681699	0.82[ASW][hapmap]
rs2681700	0.82[ASW][hapmap];0.81[CEU][hapmap]
rs33928105	0.85[EUR][1000 genomes]
rs34212237	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34902798	0.86[EUR][1000 genomes]
rs35026516	0.84[EUR][1000 genomes]
rs35204030	0.86[EUR][1000 genomes]
rs35249682	0.85[EUR][1000 genomes]
rs35355622	0.86[EUR][1000 genomes]
rs35652193	0.86[EUR][1000 genomes]
rs35805003	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36009541	0.82[EUR][1000 genomes]
rs55769955	0.86[EUR][1000 genomes]
rs56361763	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71304105	0.82[EUR][1000 genomes]
rs73226676	0.84[EUR][1000 genomes]
rs73872344	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs13071985	TFDP2	cis	parietal	SCAN

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141534800-141547800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:141539800-141547000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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