Variant report

Variant	rs34212237
Chromosome Location	chr3:141547702-141547703
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:141545797..141548193-chr3:141553197..141554756,2	MCF-7	breast:
2	chr3:141455754..141459793-chr3:141546409..141549893,5	MCF-7	breast:
3	chr3:141546349..141549180-chr3:141595509..141597123,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000114125	Chromatin interaction
ENSG00000069849	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13065327	0.83[EUR][1000 genomes]
rs13065862	0.81[EUR][1000 genomes]
rs13071985	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13076009	0.81[EUR][1000 genomes]
rs13085196	0.82[EUR][1000 genomes]
rs16851803	0.81[ASN][1000 genomes]
rs33928105	0.82[EUR][1000 genomes]
rs34902798	0.83[EUR][1000 genomes]
rs35026516	0.81[EUR][1000 genomes]
rs35204030	0.83[EUR][1000 genomes]
rs35249682	0.82[EUR][1000 genomes]
rs35355622	0.83[EUR][1000 genomes]
rs35652193	0.83[EUR][1000 genomes]
rs35805003	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs55769955	0.83[EUR][1000 genomes]
rs56361763	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73226676	0.81[EUR][1000 genomes]
rs73872344	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	nsv1013352	chr3:141541105-141870293	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141534800-141547800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:141544800-141547800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr3:141544800-141547800	Weak transcription	Adipose Nuclei	Adipose
4	chr3:141544800-141547800	Weak transcription	Esophagus	oesophagus
5	chr3:141544800-141550800	Weak transcription	Right Atrium	heart
6	chr3:141545000-141547800	Weak transcription	Psoas Muscle	Psoas
7	chr3:141546000-141548200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:141546200-141548400	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr3:141546400-141548400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr3:141546800-141548000	Enhancers	H1 Cell Line	embryonic stem cell
11	chr3:141547000-141548000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr3:141547000-141548200	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr3:141547000-141548200	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr3:141547000-141548200	Enhancers	K562	blood
15	chr3:141547000-141548400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr3:141547000-141548400	Enhancers	iPS-20b Cell Line	embryonic stem cell
17	chr3:141547000-141549000	Enhancers	NHEK	skin
18	chr3:141547000-141550600	Enhancers	Hela-S3	cervix
19	chr3:141547200-141548000	Enhancers	H9 Cell Line	embryonic stem cell
20	chr3:141547200-141548000	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr3:141547200-141548000	Enhancers	HSMM	muscle
22	chr3:141547200-141548200	Enhancers	Fetal Muscle Leg	muscle
23	chr3:141547200-141548200	Enhancers	Rectal Mucosa Donor 31	rectum
24	chr3:141547200-141548400	Enhancers	HUES64 Cell Line	embryonic stem cell
25	chr3:141547200-141548400	Enhancers	HSMMtube	muscle
26	chr3:141547200-141548600	Enhancers	Placenta	Placenta
27	chr3:141547200-141548800	Enhancers	Primary monocytes fromperipheralblood	blood
28	chr3:141547200-141549400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:141547200-141550000	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr3:141547200-141550600	Enhancers	HMEC	breast
31	chr3:141547600-141548000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr3:141547600-141548000	Enhancers	Fetal Stomach	stomach
33	chr3:141547600-141548200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr3:141547600-141548200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr3:141547600-141548200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr3:141547600-141548200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr3:141547600-141548200	Enhancers	Fetal Intestine Small	intestine
38	chr3:141547600-141548600	Enhancers	Monocytes-CD14+_RO01746	blood

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