Variant report

Variant	rs13085196
Chromosome Location	chr3:141536477-141536478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:141509980..141511814-chr3:141533732..141536683,2	K562	blood:
2	chr3:141534887..141537678-chr3:141541088..141543336,3	K562	blood:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs13065327	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13065862	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13071985	0.85[EUR][1000 genomes]
rs13076009	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2138790	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2681692	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2681693	0.85[EUR][1000 genomes]
rs2681699	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2681700	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs33928105	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34212237	0.82[EUR][1000 genomes]
rs34902798	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35026516	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35204030	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35249682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35355622	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35652193	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35805003	0.86[EUR][1000 genomes]
rs36009541	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55769955	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs56361763	0.90[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs71304105	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73226676	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949709	chr3:141295050-142178144	Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:141534800-141547800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:141536200-141537000	Enhancers	Fetal Lung	lung
3	chr3:141536400-141536800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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