Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1447960	0.83[GIH][hapmap];1.00[YRI][hapmap]
rs151749	1.00[YRI][hapmap]
rs1584340	1.00[YRI][hapmap]
rs171351	1.00[YRI][hapmap]
rs181349	1.00[ASW][hapmap];0.83[GIH][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap]
rs241669	0.83[GIH][hapmap];0.84[TSI][hapmap];1.00[YRI][hapmap]
rs241673	1.00[YRI][hapmap]
rs241674	1.00[YRI][hapmap]
rs241682	1.00[YRI][hapmap]
rs241683	1.00[YRI][hapmap]
rs241684	1.00[YRI][hapmap]
rs241699	1.00[YRI][hapmap]
rs2594259	1.00[CHB][hapmap];0.83[GIH][hapmap];1.00[YRI][hapmap]
rs2594273	1.00[YRI][hapmap]
rs2682964	0.80[ASN][1000 genomes]
rs2682981	1.00[YRI][hapmap]
rs2682982	1.00[YRI][hapmap]
rs2734367	0.83[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2734368	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2856045	1.00[YRI][hapmap]
rs6806175	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2682963	FAM107A	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60555400-60573600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:60561800-60573400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:60566000-60573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr3:60566200-60574400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr3:60568800-60573400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:60568800-60573400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:60568800-60573600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:60569000-60573600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr3:60570600-60574400	Weak transcription	Osteobl	bone
10	chr3:60570800-60572200	Enhancers	Primary B cells from cord blood	blood
11	chr3:60571400-60572200	Enhancers	Primary B cells from peripheral blood	blood

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