Variant report

Variant	rs2734367
Chromosome Location	chr3:60567427-60567428
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17063532	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs181349	0.83[CEU][hapmap];0.92[TSI][hapmap]
rs241669	0.84[TSI][hapmap]
rs2682963	0.83[GIH][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2734368	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529602	chr3:60088353-60830769	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv998815	chr3:60495872-60830769	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv999828	chr3:60537384-60785274	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2734367	FAM107A	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:60555400-60573600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr3:60561800-60567800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:60561800-60573400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:60562000-60567600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr3:60562400-60568600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:60565000-60570800	Weak transcription	Primary B cells from cord blood	blood
7	chr3:60565800-60567800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr3:60566000-60569600	Weak transcription	Osteobl	bone
9	chr3:60566000-60569800	Weak transcription	NH-A	brain
10	chr3:60566000-60573800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:60566200-60574400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr3:60566400-60568800	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr3:60566600-60569000	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr3:60566600-60570800	Weak transcription	Aorta	Aorta
15	chr3:60566800-60568600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr3:60567000-60567800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr3:60567000-60568000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:60567200-60568400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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