Variant report

Variant	rs269060
Chromosome Location	chr1:57881463-57881464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs169100	1.00[MEX][hapmap]
rs192393	1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs197623	1.00[MEX][hapmap]
rs197628	1.00[MEX][hapmap]
rs267652	1.00[MEX][hapmap]
rs269052	1.00[MEX][hapmap]
rs486804	1.00[MEX][hapmap]
rs499375	1.00[AMR][1000 genomes]
rs523282	1.00[MEX][hapmap]
rs539257	1.00[MEX][hapmap]
rs579188	1.00[MEX][hapmap]
rs7555442	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57876200-57883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr1:57880000-57884800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:57881200-57881800	Enhancers	Fetal Brain Female	brain
5	chr1:57881200-57883400	Weak transcription	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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