Variant report

Variant	rs579188
Chromosome Location	chr1:57877275-57877276
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs169100	1.00[MEX][hapmap]
rs192393	1.00[MEX][hapmap]
rs197623	1.00[MEX][hapmap]
rs197628	1.00[MEX][hapmap]
rs267652	1.00[MEX][hapmap]
rs269052	1.00[MEX][hapmap]
rs269059	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs269060	1.00[MEX][hapmap]
rs269061	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs486804	1.00[MEX][hapmap]
rs495678	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs523282	1.00[MEX][hapmap]
rs534648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs539257	1.00[MEX][hapmap]
rs548044	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs551757	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7555442	1.00[MEX][hapmap]
rs833615	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:57871000-57887600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr1:57873600-57877600	Enhancers	HUES64 Cell Line	embryonic stem cell
3	chr1:57874200-57878400	Enhancers	Hela-S3	cervix
4	chr1:57875200-57877400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr1:57875400-57877600	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:57875400-57877800	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:57875600-57877600	Enhancers	Fetal Heart	heart
8	chr1:57876000-57877600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr1:57876200-57877400	Enhancers	HSMM	muscle
10	chr1:57876200-57878200	Enhancers	Fetal Muscle Leg	muscle
11	chr1:57876200-57883800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr1:57876400-57878200	Weak transcription	Fetal Brain Female	brain
13	chr1:57876400-57880800	Weak transcription	Fetal Brain Male	brain
14	chr1:57876800-57877400	Enhancers	Stomach Mucosa	stomach
15	chr1:57876800-57877600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:57876800-57877600	Enhancers	NH-A	brain
17	chr1:57876800-57877800	Enhancers	HSMMtube	muscle
18	chr1:57877000-57877400	Enhancers	Fetal Muscle Trunk	muscle
19	chr1:57877000-57877400	Enhancers	Right Atrium	heart
20	chr1:57877000-57877600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:57877000-57877600	Enhancers	Left Ventricle	heart
22	chr1:57877000-57878400	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:57877200-57877400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr1:57877200-57877600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr1:57877200-57877600	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr1:57877200-57877600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr1:57877200-57877600	Enhancers	HMEC	breast
28	chr1:57877200-57878000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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