Variant report
| Variant | rs2692467 |
|---|---|
| Chromosome Location | chr7:13561186-13561187 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs10429087 | 0.92[ASN][1000 genomes] |
| rs12534739 | 0.83[ASN][1000 genomes] |
| rs1404937 | 0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs1404938 | 0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1663 | 0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17280283 | 0.83[ASN][1000 genomes] |
| rs2091310 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2462613 | 1.00[ASN][1000 genomes] |
| rs2462614 | 0.83[ASN][1000 genomes] |
| rs2466496 | 0.83[ASN][1000 genomes] |
| rs2466498 | 0.83[ASN][1000 genomes] |
| rs2692466 | 0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
| rs2692468 | 0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2692472 | 0.83[ASN][1000 genomes] |
| rs2692479 | 0.92[ASN][1000 genomes] |
| rs2692480 | 0.92[ASN][1000 genomes] |
| rs2692481 | 0.92[ASN][1000 genomes] |
| rs2692482 | 0.92[ASN][1000 genomes] |
| rs2692483 | 0.92[ASN][1000 genomes] |
| rs2692484 | 0.92[ASN][1000 genomes] |
| rs2692485 | 0.92[ASN][1000 genomes] |
| rs2692486 | 0.83[ASN][1000 genomes] |
| rs2692487 | 0.83[ASN][1000 genomes] |
| rs2723394 | 0.92[ASN][1000 genomes] |
| rs2723396 | 0.83[ASN][1000 genomes] |
| rs2723483 | 0.83[ASN][1000 genomes] |
| rs2723486 | 0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2723487 | 0.83[ASN][1000 genomes] |
| rs2723488 | 0.92[ASN][1000 genomes] |
| rs62451874 | 0.83[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1019173 | chr7:13063854-13585360 | Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 2 | nsv538737 | chr7:13063854-13585360 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv1023580 | chr7:13403531-13624975 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:13559000-13562200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
