Variant report

Variant	rs2692480
Chromosome Location	chr7:13547912-13547913
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10429087	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534739	0.91[ASN][1000 genomes]
rs1404937	0.82[ASN][1000 genomes]
rs1404938	0.92[ASN][1000 genomes]
rs1663	0.92[ASN][1000 genomes]
rs17280283	0.91[ASN][1000 genomes]
rs2091310	0.92[ASN][1000 genomes]
rs2462613	0.92[ASN][1000 genomes]
rs2462614	0.91[ASN][1000 genomes]
rs2466495	0.82[ASN][1000 genomes]
rs2466496	0.91[ASN][1000 genomes]
rs2466498	0.91[ASN][1000 genomes]
rs2692466	0.82[ASN][1000 genomes]
rs2692467	0.92[ASN][1000 genomes]
rs2692468	0.92[ASN][1000 genomes]
rs2692472	0.91[ASN][1000 genomes]
rs2692479	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692481	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692482	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692483	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692484	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692485	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692486	0.91[ASN][1000 genomes]
rs2692487	0.91[ASN][1000 genomes]
rs2692489	0.82[ASN][1000 genomes]
rs2723394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723396	0.91[ASN][1000 genomes]
rs2723483	0.91[ASN][1000 genomes]
rs2723486	0.92[ASN][1000 genomes]
rs2723487	0.91[ASN][1000 genomes]
rs2723488	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451874	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019173	chr7:13063854-13585360	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv538737	chr7:13063854-13585360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1028163	chr7:13478678-13559505	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13546600-13548800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr7:13547000-13549200	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr7:13547200-13548200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:13547400-13548400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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