Variant report

Variant	rs62451874
Chromosome Location	chr7:13618396-13618397
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10429087	0.91[ASN][1000 genomes]
rs12534739	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1404937	0.91[ASN][1000 genomes]
rs1404938	0.83[ASN][1000 genomes]
rs1663	0.83[ASN][1000 genomes]
rs17280283	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2091310	0.83[ASN][1000 genomes]
rs2462613	0.83[ASN][1000 genomes]
rs2462614	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466495	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2466496	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2466498	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692466	0.91[ASN][1000 genomes]
rs2692467	0.83[ASN][1000 genomes]
rs2692468	0.83[ASN][1000 genomes]
rs2692472	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692479	0.91[ASN][1000 genomes]
rs2692480	0.91[ASN][1000 genomes]
rs2692481	0.91[ASN][1000 genomes]
rs2692482	0.91[ASN][1000 genomes]
rs2692483	0.91[ASN][1000 genomes]
rs2692484	0.91[ASN][1000 genomes]
rs2692485	0.91[ASN][1000 genomes]
rs2692486	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692487	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2692489	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2723394	0.91[ASN][1000 genomes]
rs2723396	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723483	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723486	0.83[ASN][1000 genomes]
rs2723487	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2723488	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023580	chr7:13403531-13624975	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1815242	chr7:13591076-13633151	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv887690	chr7:13591197-13702169	Enhancers Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1026929	chr7:13597929-13716063	Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1023839	chr7:13617615-13735946	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:13617200-13619000	Enhancers	ES-I3 Cell Line	embryonic stem cell
2	chr7:13617200-13619000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr7:13617200-13619200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr7:13617200-13619800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:13617400-13619000	Enhancers	iPS-18 Cell Line	embryonic stem cell
6	chr7:13617600-13619200	Enhancers	HUES6 Cell Line	embryonic stem cell

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