Variant report

Variant	rs26998
Chromosome Location	chr5:94237398-94237399
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94234329..94237872-chr5:94238248..94241461,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs159349	0.82[CEU][hapmap];0.85[CHD][hapmap];0.82[TSI][hapmap]
rs26997	1.00[ASW][hapmap];0.86[CEU][hapmap];0.93[GIH][hapmap];0.95[LWK][hapmap];0.87[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs27000	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27004	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs27901	0.81[EUR][1000 genomes]
rs39988	1.00[CHB][hapmap];0.80[EUR][1000 genomes]
rs469067	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.86[EUR][1000 genomes]
rs469843	1.00[CHD][hapmap];0.88[ASN][1000 genomes]
rs469844	0.85[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes]

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94204400-94240600	Weak transcription	Lung	lung
3	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr5:94220200-94238200	Weak transcription	Psoas Muscle	Psoas
5	chr5:94225800-94241600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:94226200-94249000	Weak transcription	Left Ventricle	heart
7	chr5:94229600-94242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:94229600-94243000	Weak transcription	Brain Substantia Nigra	brain
9	chr5:94230400-94248400	Weak transcription	Thymus	Thymus
10	chr5:94230600-94240400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr5:94230600-94241400	Weak transcription	Adipose Nuclei	Adipose
12	chr5:94233400-94251600	Strong transcription	Monocytes-CD14+_RO01746	blood
13	chr5:94234000-94249000	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr5:94234200-94237400	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr5:94234200-94241800	Strong transcription	Primary hematopoietic stem cells	blood
16	chr5:94234400-94240600	Weak transcription	Dnd41	blood
17	chr5:94234400-94250000	Weak transcription	Fetal Thymus	thymus
18	chr5:94234800-94237600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr5:94235600-94238000	Enhancers	HSMM	muscle
20	chr5:94236000-94239400	Weak transcription	Primary T cells from cord blood	blood
21	chr5:94236200-94237600	Weak transcription	HUVEC	blood vessel
22	chr5:94236600-94237800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr5:94236600-94238400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr5:94236800-94237800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr5:94236800-94237800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr5:94236800-94237800	Enhancers	NHDF-Ad	bronchial
27	chr5:94236800-94237800	Enhancers	Osteobl	bone
28	chr5:94236800-94238000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr5:94236800-94238200	Enhancers	HMEC	breast
30	chr5:94237000-94237800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:94237000-94238000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
32	chr5:94237000-94238000	Enhancers	HSMMtube	muscle
33	chr5:94237000-94238000	Enhancers	NH-A	brain
34	chr5:94237200-94237400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr5:94237200-94237400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:94237200-94237400	Flanking Active TSS	NHEK	skin
37	chr5:94237200-94237600	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links