Variant report

Variant	rs27000
Chromosome Location	chr5:94235345-94235346
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:94229245..94232157-chr5:94233628..94236330,2	K562	blood:
2	chr5:94234329..94237872-chr5:94238248..94241461,3	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs159349	0.85[CHD][hapmap];1.00[JPT][hapmap]
rs26997	0.95[CEU][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs26998	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];0.87[MEX][hapmap];0.87[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27004	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs39988	0.82[CEU][hapmap];1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs469067	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs469843	1.00[CHD][hapmap];1.00[JPT][hapmap];0.83[TSI][hapmap];0.88[ASN][1000 genomes]
rs469844	1.00[CHB][hapmap]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr5:94200800-94236600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr5:94204400-94240600	Weak transcription	Lung	lung
4	chr5:94207200-94240400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr5:94220200-94238200	Weak transcription	Psoas Muscle	Psoas
6	chr5:94225200-94236200	Weak transcription	GM12878-XiMat	blood
7	chr5:94225800-94241600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:94226200-94249000	Weak transcription	Left Ventricle	heart
9	chr5:94228800-94236800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:94229600-94242400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr5:94229600-94243000	Weak transcription	Brain Substantia Nigra	brain
12	chr5:94230400-94248400	Weak transcription	Thymus	Thymus
13	chr5:94230600-94240400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:94230600-94241400	Weak transcription	Adipose Nuclei	Adipose
15	chr5:94233400-94251600	Strong transcription	Monocytes-CD14+_RO01746	blood
16	chr5:94234000-94249000	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr5:94234200-94237400	Strong transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:94234200-94241800	Strong transcription	Primary hematopoietic stem cells	blood
19	chr5:94234400-94240600	Weak transcription	Dnd41	blood
20	chr5:94234400-94250000	Weak transcription	Fetal Thymus	thymus
21	chr5:94234800-94236000	Strong transcription	Primary T cells from cord blood	blood
22	chr5:94234800-94236200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr5:94234800-94237600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr5:94235000-94236200	Strong transcription	HUVEC	blood vessel

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