Variant report

Variant	rs27004
Chromosome Location	chr5:94200774-94200775
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs26997	0.96[GIH][hapmap]
rs26998	0.86[CEU][hapmap];1.00[CHB][hapmap];0.89[GIH][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap];0.81[EUR][1000 genomes]
rs27000	1.00[CHB][hapmap];0.87[GIH][hapmap]
rs27901	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs39988	0.87[CEU][hapmap];1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs469067	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs469844	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv823144	chr5:94172237-94212534	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:94163800-94209800	Weak transcription	Dnd41	blood
2	chr5:94165000-94240800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:94165800-94206200	Weak transcription	Adipose Nuclei	Adipose
4	chr5:94181200-94209400	Weak transcription	GM12878-XiMat	blood
5	chr5:94183200-94206400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:94186400-94208000	Weak transcription	Fetal Thymus	thymus
7	chr5:94191000-94232200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr5:94193000-94201600	Weak transcription	Primary hematopoietic stem cells	blood
9	chr5:94193200-94202800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:94194000-94209200	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr5:94194200-94204200	Strong transcription	Primary neutrophils fromperipheralblood	blood
12	chr5:94197600-94201800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr5:94197800-94206200	Weak transcription	HUVEC	blood vessel
14	chr5:94199200-94200800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr5:94199800-94202600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr5:94199800-94206200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr5:94200000-94202200	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr5:94200000-94203000	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr5:94200200-94201800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr5:94200200-94202000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr5:94200200-94202400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr5:94200400-94202000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr5:94200400-94202000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr5:94200400-94202200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr5:94200400-94202400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
26	chr5:94200400-94202600	Strong transcription	Primary T cells from cord blood	blood
27	chr5:94200400-94202800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr5:94200600-94202400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:94200600-94208200	Weak transcription	Hela-S3	cervix

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