Variant report

Variant	rs2703686
Chromosome Location	chr8:99664442-99664443
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10880584	1.00[AMR][1000 genomes]
rs12319182	1.00[EUR][1000 genomes]
rs1283296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1283299	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1283309	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1315330	1.00[AMR][1000 genomes]
rs1315332	1.00[AMR][1000 genomes]
rs1315334	1.00[AMR][1000 genomes]
rs1315338	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1315352	1.00[AMR][1000 genomes]
rs1315353	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1315359	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1315360	1.00[AMR][1000 genomes]
rs1315368	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1315374	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1315376	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1672437	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1672440	1.00[AMR][1000 genomes]
rs2199981	1.00[AMR][1000 genomes]
rs2320529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2320530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2453492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2605550	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2643379	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2643388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2711534	1.00[AMR][1000 genomes]
rs2711540	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28879391	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3905692	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3906853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3906854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3906855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4002584	1.00[AMR][1000 genomes]
rs6582557	1.00[AMR][1000 genomes]
rs7297479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7306614	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1027362	chr8:99469281-99715845	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv539689	chr8:99469281-99715845	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99636200-99682400	Weak transcription	Fetal Stomach	stomach
2	chr8:99638200-99671200	Weak transcription	GM12878-XiMat	blood
3	chr8:99652600-99680600	Weak transcription	NHEK	skin
4	chr8:99659400-99676000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr8:99660000-99670200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr8:99663400-99682800	Weak transcription	Placenta	Placenta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links