Variant report

Variant	rs2707486
Chromosome Location	chr7:121053376-121053377
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:121038659..121042008-chr7:121051096..121053967,4	K562	blood:
2	chr7:121045826..121048497-chr7:121051636..121054633,2	K562	blood:
3	chr7:121036011..121038476-chr7:121052769..121054841,2	MCF-7	breast:
4	chr7:121040208..121042510-chr7:121052068..121053591,2	K562	blood:
5	chr7:121036192..121037933-chr7:121051103..121053964,3	K562	blood:
6	chr7:121036192..121037842-chr7:121051103..121053848,2	K562	blood:

Variant related genes	Relation type
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:87)

rs_ID	r²[population]
rs10215001	0.88[AFR][1000 genomes]
rs10215613	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs10215690	0.88[AFR][1000 genomes]
rs10215696	0.88[AFR][1000 genomes]
rs10224531	0.83[AFR][1000 genomes]
rs10229623	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs10255192	0.89[AFR][1000 genomes]
rs10259018	0.88[AFR][1000 genomes]
rs10267770	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs10270768	0.88[AFR][1000 genomes]
rs11971157	1.00[ASN][1000 genomes]
rs11972392	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11974013	1.00[CEU][hapmap]
rs11982913	0.95[ASN][1000 genomes]
rs12532811	1.00[ASN][1000 genomes]
rs12536097	0.98[ASN][1000 genomes]
rs12706345	0.82[AFR][1000 genomes]
rs12706347	0.81[YRI][hapmap]
rs12706348	0.82[YRI][hapmap]
rs13242463	0.80[AFR][1000 genomes]
rs1534522	0.87[AFR][1000 genomes]
rs17143359	1.00[ASN][1000 genomes]
rs1881373	0.88[AFR][1000 genomes]
rs2049703	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs2141360	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244845	0.87[AFR][1000 genomes]
rs2244847	0.88[AFR][1000 genomes]
rs2244849	0.88[AFR][1000 genomes]
rs2263404	0.87[AFR][1000 genomes]
rs2402564	0.84[AFR][1000 genomes]
rs2402565	0.87[AFR][1000 genomes]
rs2402566	0.87[AFR][1000 genomes]
rs2463645	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs2463646	0.88[AFR][1000 genomes]
rs2697168	0.87[AFR][1000 genomes]
rs2697171	0.87[AFR][1000 genomes]
rs2697172	0.87[AFR][1000 genomes]
rs2697173	0.87[AFR][1000 genomes]
rs2697174	0.91[AFR][1000 genomes]
rs2697175	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2697178	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2697180	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2697188	0.88[AFR][1000 genomes]
rs2697189	0.87[AFR][1000 genomes]
rs2697190	0.80[AFR][1000 genomes]
rs2707458	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2707484	0.85[AFR][1000 genomes]
rs2707485	0.80[AFR][1000 genomes]
rs2707489	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707490	0.84[AFR][1000 genomes]
rs2707498	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707499	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707500	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707502	0.84[AFR][1000 genomes]
rs2950813	0.88[AFR][1000 genomes]
rs2952571	0.81[AFR][1000 genomes]
rs2952573	0.90[AFR][1000 genomes]
rs2952575	0.91[AFR][1000 genomes]
rs2952577	0.91[AFR][1000 genomes]
rs2952580	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4418284	0.82[ASN][1000 genomes]
rs4731012	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs56669615	1.00[ASN][1000 genomes]
rs57826126	0.96[ASN][1000 genomes]
rs57839194	0.81[ASN][1000 genomes]
rs60993919	0.84[ASN][1000 genomes]
rs6466783	1.00[ASN][1000 genomes]
rs6466785	0.84[AFR][1000 genomes]
rs67085750	1.00[ASN][1000 genomes]
rs6950058	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6954718	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs6957417	0.82[ASN][1000 genomes]
rs6960294	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961822	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6962156	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs6974427	1.00[CEU][hapmap]
rs73442206	1.00[ASN][1000 genomes]
rs7782605	1.00[ASN][1000 genomes]
rs7800162	0.84[ASN][1000 genomes]
rs7806410	1.00[CEU][hapmap]
rs7809856	0.88[AFR][1000 genomes]
rs9656282	1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs9656283	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9656284	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9656285	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs9886342	0.86[AFR][1000 genomes]
rs9942703	1.00[YRI][hapmap];0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121048800-121054400	Weak transcription	Small Intestine	intestine
2	chr7:121052000-121054200	Weak transcription	Fetal Intestine Small	intestine
3	chr7:121053200-121054000	Weak transcription	Fetal Intestine Large	intestine

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