Variant report

Variant	rs2707500
Chromosome Location	chr7:121059871-121059872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:121054365..121057910-chr7:121059475..121061785,3	K562	blood:
2	chr7:121059489..121061007-chr7:121064201..121066957,2	K562	blood:
3	chr7:121034569..121037516-chr7:121059482..121062540,3	MCF-7	breast:
4	chr7:121034886..121037643-chr7:121057416..121062764,7	MCF-7	breast:
5	chr7:121054965..121059361-chr7:121059382..121061611,4	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-WNT16-2	chr7:121059806-121059899	NONHSAT123007

No data

Variant related genes	Relation type
ENSG00000196937	Chromatin interaction
ENSG00000227371	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs10215001	0.86[AFR][1000 genomes]
rs10215613	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs10215690	0.86[AFR][1000 genomes]
rs10215696	0.86[AFR][1000 genomes]
rs10224531	0.81[AFR][1000 genomes]
rs10229623	0.84[LWK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs10255192	0.87[AFR][1000 genomes]
rs10259018	0.86[AFR][1000 genomes]
rs10267770	0.94[YRI][hapmap];0.84[AFR][1000 genomes]
rs10270768	0.86[AFR][1000 genomes]
rs11971157	1.00[ASN][1000 genomes]
rs11972392	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11974013	0.85[CEU][hapmap]
rs11982913	0.95[ASN][1000 genomes]
rs12532811	1.00[ASN][1000 genomes]
rs12536097	0.98[ASN][1000 genomes]
rs12706345	0.80[AFR][1000 genomes]
rs12706348	0.82[YRI][hapmap]
rs1534522	0.85[AFR][1000 genomes]
rs17143359	1.00[ASN][1000 genomes]
rs1881373	0.86[AFR][1000 genomes]
rs2049703	0.84[LWK][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs2141360	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2244845	0.85[AFR][1000 genomes]
rs2244847	0.86[AFR][1000 genomes]
rs2244849	0.86[AFR][1000 genomes]
rs2263404	0.85[AFR][1000 genomes]
rs2402564	0.82[AFR][1000 genomes]
rs2402565	0.85[AFR][1000 genomes]
rs2402566	0.85[AFR][1000 genomes]
rs2463645	0.95[YRI][hapmap];0.88[AFR][1000 genomes]
rs2463646	0.86[AFR][1000 genomes]
rs2697168	0.85[AFR][1000 genomes]
rs2697171	0.85[AFR][1000 genomes]
rs2697172	0.85[AFR][1000 genomes]
rs2697173	0.85[AFR][1000 genomes]
rs2697174	0.89[AFR][1000 genomes]
rs2697175	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2697178	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2697180	0.85[CEU][hapmap];0.95[CHB][hapmap];0.94[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2697188	0.86[AFR][1000 genomes]
rs2697189	0.85[AFR][1000 genomes]
rs2707458	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs2707484	0.83[AFR][1000 genomes]
rs2707486	1.00[CEU][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707489	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707490	0.82[AFR][1000 genomes]
rs2707498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707499	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707502	0.86[AFR][1000 genomes]
rs2950813	0.86[AFR][1000 genomes]
rs2952573	0.88[AFR][1000 genomes]
rs2952575	0.89[AFR][1000 genomes]
rs2952577	0.89[AFR][1000 genomes]
rs2952580	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4418284	0.82[ASN][1000 genomes]
rs4731012	0.94[YRI][hapmap];0.86[AFR][1000 genomes]
rs56669615	1.00[ASN][1000 genomes]
rs57826126	0.96[ASN][1000 genomes]
rs57839194	0.81[ASN][1000 genomes]
rs60993919	0.84[ASN][1000 genomes]
rs6466783	1.00[ASN][1000 genomes]
rs6466785	0.82[AFR][1000 genomes]
rs67085750	1.00[ASN][1000 genomes]
rs6950058	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6954718	0.85[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6957417	0.82[ASN][1000 genomes]
rs6960294	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961822	0.95[YRI][hapmap];0.82[AFR][1000 genomes]
rs6962156	0.94[YRI][hapmap];0.82[AFR][1000 genomes]
rs6974427	0.85[CEU][hapmap]
rs73442206	1.00[ASN][1000 genomes]
rs7782605	1.00[ASN][1000 genomes]
rs7800162	0.90[CHB][hapmap];0.88[JPT][hapmap];0.84[ASN][1000 genomes]
rs7806410	0.85[CEU][hapmap]
rs7809856	0.86[AFR][1000 genomes]
rs9656282	0.95[YRI][hapmap];0.84[AFR][1000 genomes]
rs9656283	0.95[YRI][hapmap];0.83[AFR][1000 genomes]
rs9656284	1.00[YRI][hapmap];0.83[AFR][1000 genomes]
rs9656285	0.94[YRI][hapmap];0.83[AFR][1000 genomes]
rs9886342	0.88[AFR][1000 genomes]
rs9942703	0.95[YRI][hapmap];0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv2757238	chr7:121059871-121089955	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2759559	chr7:121059871-121089955	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121056800-121065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:121058000-121062200	Enhancers	Fetal Intestine Small	intestine
3	chr7:121058800-121062000	Enhancers	Fetal Intestine Large	intestine
4	chr7:121059400-121060200	Bivalent Enhancer	Stomach Mucosa	stomach
5	chr7:121059400-121060400	Enhancers	Pancreas	Pancrea
6	chr7:121059400-121061800	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:121059400-121062200	Enhancers	Placenta	Placenta
8	chr7:121059600-121060200	Enhancers	Gastric	stomach
9	chr7:121059800-121060000	Enhancers	Esophagus	oesophagus
10	chr7:121059800-121062000	Enhancers	Duodenum Mucosa	Duodenum

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