Variant report

Variant	rs7806410
Chromosome Location	chr7:121061528-121061529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:121060143..121062548-chr7:121064145..121066050,2	MCF-7	breast:
2	chr7:121054365..121057910-chr7:121059475..121061785,3	K562	blood:
3	chr7:121034569..121037516-chr7:121059482..121062540,3	MCF-7	breast:
4	chr7:121034886..121037643-chr7:121057416..121062764,7	MCF-7	breast:
5	chr7:121054965..121059361-chr7:121059382..121061611,4	K562	blood:

Variant related genes	Relation type
ENSG00000227371	Chromatin interaction
ENSG00000196937	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11971157	0.93[EUR][1000 genomes]
rs11972392	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs11974013	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11979164	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11982913	0.93[EUR][1000 genomes]
rs12532811	0.93[EUR][1000 genomes]
rs12536097	0.93[EUR][1000 genomes]
rs17143359	0.93[EUR][1000 genomes]
rs2141360	0.85[CEU][hapmap]
rs2697175	0.85[CEU][hapmap]
rs2697178	0.85[CEU][hapmap]
rs2697180	1.00[CEU][hapmap]
rs2707486	1.00[CEU][hapmap]
rs2707489	0.85[CEU][hapmap]
rs2707499	0.85[CEU][hapmap]
rs2707500	0.85[CEU][hapmap]
rs56055102	0.93[EUR][1000 genomes]
rs56669615	0.93[EUR][1000 genomes]
rs57207725	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57826126	0.93[EUR][1000 genomes]
rs58136902	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60641394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466783	0.93[EUR][1000 genomes]
rs66987900	1.00[ASN][1000 genomes]
rs67085750	0.93[EUR][1000 genomes]
rs6950058	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6954718	1.00[CEU][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes]
rs6974427	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221350	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221351	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73221355	1.00[ASN][1000 genomes]
rs73442206	0.93[EUR][1000 genomes]
rs7782605	0.93[EUR][1000 genomes]
rs798922	1.00[MEX][hapmap]
rs798924	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025430	chr7:120638930-121179289	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1026322	chr7:120841937-121188037	Weak transcription Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv539102	chr7:120841937-121188037	Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	esv2755350	chr7:120848049-121119049	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Bivalent/Poised TSS Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv1032054	chr7:120926379-121432971	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv539103	chr7:120926379-121432971	Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv428507	chr7:121037303-121191934	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	esv2757238	chr7:121059871-121089955	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	esv2759559	chr7:121059871-121089955	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:121056800-121065800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:121058000-121062200	Enhancers	Fetal Intestine Small	intestine
3	chr7:121058800-121062000	Enhancers	Fetal Intestine Large	intestine
4	chr7:121059400-121061800	Enhancers	Rectal Mucosa Donor 31	rectum
5	chr7:121059400-121062200	Enhancers	Placenta	Placenta
6	chr7:121059800-121062000	Enhancers	Duodenum Mucosa	Duodenum
7	chr7:121060200-121061600	Weak transcription	Gastric	stomach
8	chr7:121060200-121062000	Enhancers	Stomach Mucosa	stomach
9	chr7:121060800-121061600	Enhancers	HMEC	breast
10	chr7:121061000-121061600	Enhancers	NHEK	skin
11	chr7:121061000-121061800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr7:121061200-121061600	Enhancers	K562	blood
13	chr7:121061400-121061800	Enhancers	Small Intestine	intestine
14	chr7:121061400-121062000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:121061400-121062000	Enhancers	Placenta Amnion	Placenta Amnion
16	chr7:121061400-121062200	Enhancers	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links