Variant report

Variant	rs2707700
Chromosome Location	chr4:160339394-160339395
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10517700	0.86[EUR][1000 genomes]
rs2016804	0.86[EUR][1000 genomes]
rs2463987	0.97[AFR][1000 genomes]
rs2699017	0.95[AFR][1000 genomes]
rs2699028	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699029	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2699031	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707662	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2707663	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2952608	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4083283	0.86[EUR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:160337400-160339400	Enhancers	NHEK	skin
2	chr4:160337400-160339800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr4:160337400-160341200	Enhancers	HepG2	liver
4	chr4:160338400-160339400	Enhancers	Hela-S3	cervix
5	chr4:160338400-160339400	Enhancers	HMEC	breast
6	chr4:160338400-160339600	Enhancers	NH-A	brain
7	chr4:160339200-160348000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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