Variant report

Variant	rs2711591
Chromosome Location	chr15:54273448-54273449
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:54272577..54275424-chr15:54278207..54281083,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1478179	1.00[EUR][1000 genomes]
rs16973879	1.00[EUR][1000 genomes]
rs16973908	1.00[EUR][1000 genomes]
rs1841939	1.00[EUR][1000 genomes]
rs1960689	1.00[EUR][1000 genomes]
rs1961238	1.00[EUR][1000 genomes]
rs2019409	1.00[EUR][1000 genomes]
rs2414278	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2616876	1.00[EUR][1000 genomes]
rs2899531	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55646360	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56227325	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57058740	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57260274	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58516496	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60004652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74016021	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016022	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016023	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016024	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016025	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016027	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016028	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016029	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016030	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016032	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016033	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016034	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016036	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016037	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs74016047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74016051	0.85[EUR][1000 genomes]
rs991073	0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9972328	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9972357	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904223	chr15:53665247-54340070	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1052235	chr15:53677524-54618723	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv542388	chr15:53677524-54618723	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv904226	chr15:53883244-54458310	Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv457144	chr15:53890362-54455757	Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv569440	chr15:53890362-54455757	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv569441	chr15:53890362-54456754	Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv457145	chr15:53890393-54456754	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv569442	chr15:53890393-54456754	Bivalent/Poised TSS Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv949528	chr15:54041154-54281981	Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv817539	chr15:54132584-55095235	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
12	nsv833011	chr15:54226235-54421567	Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv569491	chr15:54260920-54397493	Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
14	nsv904229	chr15:54267610-54340070	Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:54269200-54277200	Active TSS	Aorta	Aorta
2	chr15:54269800-54274800	Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr15:54270400-54274200	Active TSS	Fetal Brain Female	brain
4	chr15:54270600-54273600	Active TSS	Brain Inferior Temporal Lobe	brain
5	chr15:54270600-54273800	Active TSS	Fetal Lung	lung
6	chr15:54270800-54274600	Active TSS	Skeletal Muscle Female	skeletal muscle
7	chr15:54271400-54274000	Active TSS	Duodenum Smooth Muscle	Duodenum
8	chr15:54271800-54281200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:54273000-54274000	Active TSS	Brain Angular Gyrus	brain

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