Variant report

Variant	rs2713786
Chromosome Location	chr3:100678520-100678521
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1036467	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs10511181	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13060137	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs13060166	0.87[EUR][1000 genomes]
rs13072000	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs13072788	0.89[EUR][1000 genomes]
rs13077353	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13079002	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs13080859	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13088524	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13091757	0.87[EUR][1000 genomes]
rs13092605	0.87[EUR][1000 genomes]
rs13099053	0.85[EUR][1000 genomes]
rs13100301	0.89[EUR][1000 genomes]
rs17284842	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs17338506	0.85[CEU][hapmap]
rs17398421	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17398684	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17399603	0.89[EUR][1000 genomes]
rs2245266	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2245473	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs2245556	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2576365	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs2576369	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2576372	0.91[EUR][1000 genomes]
rs2576377	0.93[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2576382	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2576387	0.89[EUR][1000 genomes]
rs2576391	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2595893	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2595894	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2713748	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2713764	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2713782	0.81[CEU][hapmap];0.89[EUR][1000 genomes]
rs2713787	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2713788	0.84[EUR][1000 genomes]
rs2713789	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2713793	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs34275644	0.92[EUR][1000 genomes]
rs34315591	0.87[EUR][1000 genomes]
rs34515751	0.92[EUR][1000 genomes]
rs34565718	0.89[EUR][1000 genomes]
rs34645172	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34719725	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34897295	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34999788	0.82[EUR][1000 genomes]
rs35509049	0.94[EUR][1000 genomes]
rs35517882	0.80[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35530876	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35617051	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35630894	0.94[EUR][1000 genomes]
rs35974360	0.84[EUR][1000 genomes]
rs35999953	0.87[EUR][1000 genomes]
rs36156426	0.89[EUR][1000 genomes]
rs36165056	0.87[EUR][1000 genomes]
rs36194526	0.92[EUR][1000 genomes]
rs4060963	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs41273553	0.85[EUR][1000 genomes]
rs41386544	0.84[EUR][1000 genomes]
rs4928096	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.85[EUR][1000 genomes]
rs62273925	0.89[EUR][1000 genomes]
rs62273927	0.89[EUR][1000 genomes]
rs62273928	0.89[EUR][1000 genomes]
rs62273930	0.92[EUR][1000 genomes]
rs62273935	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62275197	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62275198	0.98[EUR][1000 genomes]
rs62275199	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62275200	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62275203	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275204	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275770	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62275773	0.89[EUR][1000 genomes]
rs62275774	0.83[EUR][1000 genomes]
rs62275825	0.84[EUR][1000 genomes]
rs6441552	1.00[CHD][hapmap]
rs66852780	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs67946790	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs67991823	0.85[EUR][1000 genomes]
rs73143088	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7431835	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs9832195	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs9840644	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100674200-100687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100674200-100688000	Weak transcription	Ovary	ovary
3	chr3:100674400-100684600	Weak transcription	Fetal Stomach	stomach
4	chr3:100675800-100679200	Weak transcription	Aorta	Aorta
5	chr3:100676800-100687800	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:100677400-100679400	Weak transcription	HSMMtube	muscle
7	chr3:100678400-100678800	ZNF genes & repeats	NHDF-Ad	bronchial
8	chr3:100678400-100679200	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
9	chr3:100678400-100679600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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