Variant report

Variant	rs35530876
Chromosome Location	chr3:100680492-100680493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:100678632..100680871-chr3:100682682..100684359,2	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:82)

rs_ID	r²[population]
rs1036467	0.90[EUR][1000 genomes]
rs10511181	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13060137	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13060166	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13072000	0.87[EUR][1000 genomes]
rs13072788	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13077353	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13079002	0.87[EUR][1000 genomes]
rs13080859	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs13088524	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13091757	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13092605	0.85[EUR][1000 genomes]
rs13099053	0.87[EUR][1000 genomes]
rs13100301	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17284842	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17398421	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17398684	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17399603	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2245266	0.85[EUR][1000 genomes]
rs2245473	0.87[EUR][1000 genomes]
rs2245556	0.85[EUR][1000 genomes]
rs2576365	0.85[EUR][1000 genomes]
rs2576369	0.85[EUR][1000 genomes]
rs2576372	0.89[EUR][1000 genomes]
rs2576377	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2576382	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2576387	0.87[EUR][1000 genomes]
rs2576391	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2595893	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2595894	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2713748	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2713764	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2713782	0.87[EUR][1000 genomes]
rs2713786	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2713787	0.85[EUR][1000 genomes]
rs2713788	0.82[EUR][1000 genomes]
rs2713789	0.85[EUR][1000 genomes]
rs2713793	0.85[EUR][1000 genomes]
rs34275644	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34315591	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34515751	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34565718	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34645172	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34719725	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34897295	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34999788	0.84[EUR][1000 genomes]
rs35509049	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35517882	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35617051	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35630894	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35974360	0.86[EUR][1000 genomes]
rs35999953	0.85[EUR][1000 genomes]
rs36156426	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs36165056	0.85[EUR][1000 genomes]
rs36194526	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4060963	0.85[EUR][1000 genomes]
rs41273553	0.87[EUR][1000 genomes]
rs41386544	0.86[EUR][1000 genomes]
rs4928096	0.87[EUR][1000 genomes]
rs62273925	0.90[EUR][1000 genomes]
rs62273927	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273928	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs62273930	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62273935	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275197	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275198	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275199	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62275200	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62275203	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62275204	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62275770	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62275773	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62275774	0.85[EUR][1000 genomes]
rs62275825	0.86[EUR][1000 genomes]
rs66852780	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs67946790	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67991823	0.87[EUR][1000 genomes]
rs73137276	0.80[EUR][1000 genomes]
rs73143088	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7431835	0.90[EUR][1000 genomes]
rs9832195	0.85[EUR][1000 genomes]
rs9840644	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100674200-100687600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100674200-100688000	Weak transcription	Ovary	ovary
3	chr3:100674400-100684600	Weak transcription	Fetal Stomach	stomach
4	chr3:100676800-100687800	Weak transcription	Colon Smooth Muscle	Colon
5	chr3:100679200-100690200	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr3:100679400-100681600	Enhancers	HSMMtube	muscle
7	chr3:100679600-100681600	Strong transcription	Osteobl	bone
8	chr3:100679800-100685400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links