Variant report

Variant	rs17399603
Chromosome Location	chr3:100736139-100736140
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1036467	0.85[CEU][hapmap];0.82[EUR][1000 genomes]
rs10511181	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13059867	0.87[AMR][1000 genomes]
rs13060137	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13060166	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13072788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13074729	0.82[AMR][1000 genomes]
rs13077353	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs13080859	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13088524	0.85[CEU][hapmap];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13091757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13100301	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17284842	0.85[CEU][hapmap];0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17398421	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes]
rs17398684	0.85[CEU][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2245473	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs2245556	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2576365	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2576377	0.80[AMR][1000 genomes]
rs2576382	0.85[CEU][hapmap];0.85[EUR][1000 genomes]
rs2576391	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2595893	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs2595894	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs2713748	0.80[AMR][1000 genomes]
rs2713764	0.85[EUR][1000 genomes]
rs2713786	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap];0.89[EUR][1000 genomes]
rs34275644	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34315591	0.94[AMR][1000 genomes]
rs34515751	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34565718	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs34645172	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs34719725	0.91[EUR][1000 genomes]
rs34897295	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35509049	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35517882	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35530876	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35617051	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35630894	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs35974360	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs36156426	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs36194526	0.97[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs41386544	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4928096	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs62273925	0.82[EUR][1000 genomes]
rs62273927	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62273928	0.97[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs62273930	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62273935	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62275197	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62275198	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62275199	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275200	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62275203	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62275204	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs62275770	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62275774	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62275825	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62275826	0.87[AMR][1000 genomes]
rs66852780	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs67946790	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73143088	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7431835	0.85[CEU][hapmap];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100730000-100745800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr3:100735400-100736400	Enhancers	Muscle Satellite Cultured Cells	--
3	chr3:100735400-100736400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr3:100735400-100736400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:100735400-100736600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr3:100735600-100736200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr3:100735600-100736400	Enhancers	NHDF-Ad	bronchial
8	chr3:100735600-100736400	Enhancers	NHEK	skin
9	chr3:100735800-100736200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:100735800-100736200	Active TSS	Ovary	ovary
11	chr3:100735800-100736200	Flanking Active TSS	Osteobl	bone
12	chr3:100735800-100736400	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:100735800-100736600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr3:100735800-100736600	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:100735800-100736600	Enhancers	HSMMtube	muscle
16	chr3:100736000-100736200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr3:100736000-100736200	Enhancers	HUVEC	blood vessel
18	chr3:100736000-100736400	Enhancers	NHLF	lung

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