Variant report

Variant	rs13059867
Chromosome Location	chr3:100765548-100765549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10511181	0.81[AMR][1000 genomes]
rs10511182	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13060137	0.84[AMR][1000 genomes]
rs13060166	0.87[AMR][1000 genomes]
rs13060849	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13065684	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13072788	0.87[AMR][1000 genomes]
rs13074729	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13081830	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13085636	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13085839	0.87[EUR][1000 genomes]
rs13086519	1.00[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs13091757	0.87[AMR][1000 genomes]
rs13100301	0.84[AMR][1000 genomes]
rs16843198	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16843216	0.87[EUR][1000 genomes]
rs16843225	0.85[EUR][1000 genomes]
rs16843229	0.85[EUR][1000 genomes]
rs17219986	0.87[EUR][1000 genomes]
rs17284842	0.84[AMR][1000 genomes]
rs17398684	0.81[AMR][1000 genomes]
rs17399603	0.87[AMR][1000 genomes]
rs1839298	1.00[AFR][1000 genomes]
rs34275644	0.84[AMR][1000 genomes]
rs34281790	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34315591	0.81[AMR][1000 genomes]
rs34515751	0.84[AMR][1000 genomes]
rs34565718	0.84[AMR][1000 genomes]
rs34645172	0.81[AMR][1000 genomes]
rs34897295	0.81[AMR][1000 genomes]
rs35252712	1.00[AFR][1000 genomes]
rs35333915	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35337386	1.00[AFR][1000 genomes]
rs35509049	0.84[AMR][1000 genomes]
rs35517882	0.81[AMR][1000 genomes]
rs35573711	1.00[AFR][1000 genomes]
rs35630894	0.84[AMR][1000 genomes]
rs35850913	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35856427	0.82[EUR][1000 genomes]
rs35974360	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs36082674	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs36156426	0.84[AMR][1000 genomes]
rs36194526	0.84[AMR][1000 genomes]
rs41386544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62273927	0.84[AMR][1000 genomes]
rs62273928	0.84[AMR][1000 genomes]
rs62273930	0.81[AMR][1000 genomes]
rs62274066	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62274067	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs62275199	0.81[AMR][1000 genomes]
rs62275200	0.81[AMR][1000 genomes]
rs62275203	0.81[AMR][1000 genomes]
rs62275204	0.81[AMR][1000 genomes]
rs62275770	0.81[AMR][1000 genomes]
rs62275773	0.87[AMR][1000 genomes]
rs62275774	1.00[AMR][1000 genomes]
rs62275825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62275826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66598219	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66852780	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv591176	chr3:100763611-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100762600-100780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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