Variant report

Variant	rs35333915
Chromosome Location	chr3:100787061-100787062
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10511182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13059867	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13060849	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13065583	0.83[EUR][1000 genomes]
rs13065684	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13074729	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13081830	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13085636	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085839	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13086519	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16843198	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16843216	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16843225	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16843229	0.93[EUR][1000 genomes]
rs17219986	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1839298	0.84[EUR][1000 genomes]
rs34281790	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35252712	0.85[EUR][1000 genomes]
rs35337386	0.85[EUR][1000 genomes]
rs35573711	0.85[EUR][1000 genomes]
rs35850913	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35856427	0.90[EUR][1000 genomes]
rs35974360	0.82[AMR][1000 genomes]
rs36077661	0.83[EUR][1000 genomes]
rs36082674	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41386544	0.82[AMR][1000 genomes]
rs58427219	0.82[EUR][1000 genomes]
rs62274066	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274067	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274076	0.83[EUR][1000 genomes]
rs62274077	0.83[EUR][1000 genomes]
rs62274078	0.83[EUR][1000 genomes]
rs62275774	0.82[AMR][1000 genomes]
rs62275825	0.82[AMR][1000 genomes]
rs62275826	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66598219	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67144487	0.82[EUR][1000 genomes]
rs6781722	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv591176	chr3:100763611-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591177	chr3:100767398-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3344837	chr3:100774311-100789597	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100785800-100788200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr3:100785800-100788200	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:100785800-100788400	Enhancers	Muscle Satellite Cultured Cells	--
4	chr3:100785800-100788400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:100785800-100788800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:100785800-100788800	Weak transcription	Fetal Stomach	stomach
7	chr3:100785800-100788800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:100785800-100789000	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr3:100785800-100789200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr3:100786000-100787200	Weak transcription	Hela-S3	cervix
11	chr3:100786000-100787200	Weak transcription	NHDF-Ad	bronchial
12	chr3:100786000-100787200	Weak transcription	NHLF	lung
13	chr3:100786000-100787800	Weak transcription	A549	lung
14	chr3:100786000-100787800	Weak transcription	HSMM	muscle
15	chr3:100786000-100787800	Weak transcription	HUVEC	blood vessel
16	chr3:100786000-100788000	Weak transcription	Fetal Intestine Large	intestine
17	chr3:100786000-100788000	Weak transcription	HSMMtube	muscle
18	chr3:100786000-100788200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:100786000-100788200	Weak transcription	Colon Smooth Muscle	Colon
20	chr3:100786000-100788200	Weak transcription	Fetal Intestine Small	intestine
21	chr3:100786000-100788200	Weak transcription	Osteobl	bone
22	chr3:100786000-100788400	Weak transcription	NH-A	brain
23	chr3:100786000-100788800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:100786000-100788800	Weak transcription	Duodenum Mucosa	Duodenum
25	chr3:100786000-100788800	Weak transcription	HMEC	breast
26	chr3:100786000-100789000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr3:100786000-100789200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr3:100786000-100791000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:100786000-100791000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:100786200-100787400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:100786200-100787800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:100786200-100787800	Weak transcription	NHEK	skin
33	chr3:100786600-100789200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links