Variant report

Variant	rs16843198
Chromosome Location	chr3:100783075-100783076
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs1036467	1.00[CEU][hapmap]
rs10511181	1.00[CEU][hapmap]
rs10511182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13059867	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13060137	1.00[CEU][hapmap]
rs13060849	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13065583	0.83[EUR][1000 genomes]
rs13065684	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13072000	0.85[CEU][hapmap]
rs13074729	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13077353	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs13079002	0.85[CEU][hapmap]
rs13081830	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13085636	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085839	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13086519	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13088524	1.00[CEU][hapmap]
rs16843216	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16843225	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16843229	0.93[EUR][1000 genomes]
rs17219986	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17284842	1.00[CEU][hapmap]
rs17338506	0.85[CEU][hapmap]
rs17398421	1.00[CEU][hapmap];0.94[TSI][hapmap]
rs17398684	1.00[CEU][hapmap]
rs1839298	0.84[EUR][1000 genomes]
rs2245266	0.85[CEU][hapmap]
rs2245473	0.85[CEU][hapmap];0.94[TSI][hapmap]
rs2245556	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs2576365	0.85[CEU][hapmap];0.88[TSI][hapmap]
rs2576369	0.85[CEU][hapmap]
rs2576377	0.93[CEU][hapmap]
rs2576382	1.00[CEU][hapmap]
rs2576391	1.00[CEU][hapmap]
rs2576393	0.83[MKK][hapmap]
rs2595893	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2595894	1.00[CEU][hapmap]
rs2713782	0.81[CEU][hapmap]
rs2713786	1.00[CEU][hapmap];0.88[TSI][hapmap]
rs2713787	0.85[CEU][hapmap]
rs2713789	0.85[CEU][hapmap]
rs2713793	0.85[CEU][hapmap]
rs34281790	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35252712	0.85[EUR][1000 genomes]
rs35333915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35337386	0.85[EUR][1000 genomes]
rs35573711	0.85[EUR][1000 genomes]
rs35850913	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35856427	0.90[EUR][1000 genomes]
rs35974360	0.82[AMR][1000 genomes]
rs36077661	0.83[EUR][1000 genomes]
rs36082674	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4060963	0.85[CEU][hapmap]
rs41386544	0.82[AMR][1000 genomes]
rs4928096	0.94[TSI][hapmap]
rs58427219	0.82[EUR][1000 genomes]
rs62274066	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274067	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62274076	0.83[EUR][1000 genomes]
rs62274077	0.83[EUR][1000 genomes]
rs62274078	0.83[EUR][1000 genomes]
rs62275774	0.82[AMR][1000 genomes]
rs62275825	0.82[AMR][1000 genomes]
rs62275826	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs66598219	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs67144487	0.82[EUR][1000 genomes]
rs6781722	0.85[AFR][1000 genomes]
rs7431835	1.00[CEU][hapmap]
rs9832195	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv591176	chr3:100763611-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv591177	chr3:100767398-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3344837	chr3:100774311-100789597	Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100780600-100783600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:100780600-100783600	Weak transcription	HMEC	breast
3	chr3:100780600-100783800	Weak transcription	Osteobl	bone
4	chr3:100781800-100784200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr3:100781800-100785200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:100782000-100785000	Enhancers	NHDF-Ad	bronchial
7	chr3:100782200-100783800	Weak transcription	Fetal Stomach	stomach
8	chr3:100782600-100783600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:100783000-100784600	Enhancers	Muscle Satellite Cultured Cells	--

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