Variant report

Variant	rs62274078
Chromosome Location	chr3:100813456-100813457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10511182	0.83[EUR][1000 genomes]
rs13060849	0.83[EUR][1000 genomes]
rs13065583	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13065684	0.83[EUR][1000 genomes]
rs13081830	0.85[EUR][1000 genomes]
rs13085636	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13085839	0.89[EUR][1000 genomes]
rs13086519	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16843198	0.83[EUR][1000 genomes]
rs16843216	0.87[EUR][1000 genomes]
rs16843225	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16843229	0.87[EUR][1000 genomes]
rs17219986	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1839298	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34281790	0.85[EUR][1000 genomes]
rs35252712	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35333915	0.83[EUR][1000 genomes]
rs35337386	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35573711	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs35850913	0.83[EUR][1000 genomes]
rs35856427	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs36077661	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36082674	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58427219	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62274066	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62274067	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62274076	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62274077	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs66598219	0.83[EUR][1000 genomes]
rs67144487	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73145363	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100804000-100814200	Weak transcription	NHDF-Ad	bronchial
2	chr3:100809400-100814600	Weak transcription	NHLF	lung
3	chr3:100810400-100814200	Weak transcription	Osteobl	bone

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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