Variant report

Variant	rs16843225
Chromosome Location	chr3:100801257-100801258
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs1036467	1.00[CEU][hapmap]
rs10511181	1.00[CEU][hapmap]
rs10511182	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13059867	0.85[EUR][1000 genomes]
rs13060137	1.00[CEU][hapmap]
rs13060849	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13065583	0.86[EUR][1000 genomes]
rs13065684	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs13072000	0.85[CEU][hapmap]
rs13074729	0.85[EUR][1000 genomes]
rs13077353	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap]
rs13079002	0.85[CEU][hapmap]
rs13081830	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs13085636	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13085839	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13086519	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs13088524	1.00[CEU][hapmap]
rs16843198	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs16843216	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16843229	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17219986	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17284842	1.00[CEU][hapmap]
rs17338506	0.85[CEU][hapmap]
rs17398421	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap]
rs17398684	1.00[CEU][hapmap]
rs1839298	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2245266	0.85[CEU][hapmap]
rs2245473	0.85[CEU][hapmap];1.00[CHD][hapmap];0.94[TSI][hapmap]
rs2245556	0.85[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs2576365	0.85[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs2576369	0.85[CEU][hapmap]
rs2576377	0.93[CEU][hapmap]
rs2576382	1.00[CEU][hapmap]
rs2576391	1.00[CEU][hapmap]
rs2576393	0.83[MKK][hapmap]
rs2595893	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs2595894	1.00[CEU][hapmap]
rs2713782	0.81[CEU][hapmap]
rs2713786	1.00[CEU][hapmap];1.00[CHD][hapmap];0.88[TSI][hapmap]
rs2713787	0.85[CEU][hapmap]
rs2713789	0.85[CEU][hapmap]
rs2713793	0.85[CEU][hapmap]
rs34281790	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35252712	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35333915	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35337386	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35573711	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35850913	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs35856427	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs36077661	0.86[EUR][1000 genomes]
rs36082674	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4060963	0.85[CEU][hapmap]
rs4928096	1.00[CHD][hapmap];0.94[TSI][hapmap]
rs58427219	0.85[EUR][1000 genomes]
rs62274066	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62274067	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62274076	0.86[EUR][1000 genomes]
rs62274077	0.86[EUR][1000 genomes]
rs62274078	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62275826	0.85[EUR][1000 genomes]
rs66598219	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs67144487	0.85[EUR][1000 genomes]
rs7431835	1.00[CEU][hapmap]
rs9832195	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100796800-100803800	Weak transcription	Osteobl	bone
2	chr3:100799600-100801800	Enhancers	HSMM	muscle
3	chr3:100799800-100801600	Enhancers	HSMMtube	muscle
4	chr3:100800000-100801600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:100800200-100801600	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:100800200-100801600	Enhancers	Colon Smooth Muscle	Colon
7	chr3:100800200-100802200	Enhancers	Fetal Stomach	stomach
8	chr3:100800800-100801400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr3:100801200-100801600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

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