Variant report

Variant	rs13074729
Chromosome Location	chr3:100765584-100765585
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs1036467	1.00[CEU][hapmap]
rs10511181	1.00[CEU][hapmap]
rs10511182	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13059867	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13060137	1.00[CEU][hapmap]
rs13060166	0.82[AMR][1000 genomes]
rs13060849	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13065684	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13072000	0.85[CEU][hapmap]
rs13072788	0.82[AMR][1000 genomes]
rs13077353	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs13079002	0.85[CEU][hapmap]
rs13081830	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs13085636	0.87[EUR][1000 genomes]
rs13085839	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13086519	0.85[EUR][1000 genomes]
rs13088524	1.00[CEU][hapmap]
rs13091757	0.82[AMR][1000 genomes]
rs1449318	0.85[AFR][1000 genomes]
rs16843198	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16843216	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16843225	0.85[EUR][1000 genomes]
rs16843229	0.85[EUR][1000 genomes]
rs17219986	0.87[EUR][1000 genomes]
rs17284842	1.00[CEU][hapmap]
rs17338506	0.85[CEU][hapmap]
rs17398421	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs17398684	1.00[CEU][hapmap]
rs17399603	0.82[AMR][1000 genomes]
rs2245266	0.85[CEU][hapmap]
rs2245473	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs2245556	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2576365	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2576369	0.85[CEU][hapmap]
rs2576377	0.93[CEU][hapmap]
rs2576382	1.00[CEU][hapmap]
rs2576391	1.00[CEU][hapmap]
rs2576393	1.00[MKK][hapmap]
rs2595893	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2595894	1.00[CEU][hapmap]
rs2713782	0.81[CEU][hapmap]
rs2713786	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.88[TSI][hapmap]
rs2713787	0.85[CEU][hapmap]
rs2713789	0.85[CEU][hapmap]
rs2713793	0.85[CEU][hapmap]
rs34281790	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs35333915	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35850913	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35856427	0.82[EUR][1000 genomes]
rs35974360	0.94[AMR][1000 genomes]
rs36082674	0.87[EUR][1000 genomes]
rs4060963	0.85[CEU][hapmap]
rs41386544	0.94[AMR][1000 genomes]
rs4928096	1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.94[TSI][hapmap]
rs62274066	0.87[EUR][1000 genomes]
rs62274067	0.87[EUR][1000 genomes]
rs62275773	0.82[AMR][1000 genomes]
rs62275774	0.94[AMR][1000 genomes]
rs62275825	0.94[AMR][1000 genomes]
rs62275826	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs66598219	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7431835	1.00[CEU][hapmap]
rs9832195	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931417	chr3:100547347-101183844	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv2757881	chr3:100613387-100776497	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv2759163	chr3:100613387-100776497	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv877222	chr3:100715576-101038297	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv591176	chr3:100763611-100799644	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:100762600-100780200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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