Variant report

Variant	rs2715635
Chromosome Location	chr3:133594896-133594897
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1106735	0.88[CHB][hapmap]
rs1917778	0.97[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs1917779	0.88[CHB][hapmap]
rs1949882	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2140921	0.86[ASN][1000 genomes]
rs2370638	0.86[ASN][1000 genomes]
rs2692682	0.80[CEU][hapmap];0.88[CHB][hapmap]
rs2692686	0.86[ASN][1000 genomes]
rs2715616	0.86[ASN][1000 genomes]
rs2715620	0.81[CEU][hapmap];0.88[CHB][hapmap]
rs2715630	0.88[CHB][hapmap]
rs7610245	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133588800-133595000	Weak transcription	Brain Substantia Nigra	brain
2	chr3:133590600-133606600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr3:133591400-133598200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr3:133592000-133602000	Weak transcription	Brain Angular Gyrus	brain
5	chr3:133592200-133596200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr3:133592400-133598400	Weak transcription	Brain Cingulate Gyrus	brain
7	chr3:133592400-133602800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr3:133592400-133605800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:133594600-133595200	Enhancers	Brain Anterior Caudate	brain
10	chr3:133594800-133595400	Weak transcription	Brain Germinal Matrix	brain
11	chr3:133594800-133595800	Weak transcription	K562	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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